Strain Fitness in Shewanella oneidensis MR-1 around SO0001

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
315	-				+1.6
452	-	mioC	SO0001	0.27	-0.7
566	-	mioC	SO0001	0.53	-2.1
679	-	mioC	SO0001	0.78	-1.4
793	-				+0.1
885	-				+0.2
885	-				+0.1
891	-				-0.0
910	-				+0.2
945	+				-0.1
995	-				+0.5
1,088	+				-1.0
1,093	+				+1.2
1,095	+				+1.1
1,104	-				-1.0
1,106	+				-0.1
1,124	+		SO0002	0.11	+1.2
1,124	+		SO0002	0.11	-0.6
1,138	+		SO0002	0.12	-0.7
1,143	+		SO0002	0.12	+0.1
1,213	-		SO0002	0.17	+0.2
1,215	+		SO0002	0.17	+0.3
1,248	-		SO0002	0.19	+0.1
1,311	+		SO0002	0.23	+0.2
1,341	+		SO0002	0.25	-0.4
1,517	-		SO0002	0.36	-1.1
1,517	-		SO0002	0.36	-0.4
1,524	-		SO0002	0.37	-0.7
1,553	+		SO0002	0.39	+0.7
1,722	-		SO0002	0.50	+0.3