Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3664

Experiment: Glucose defined 30C timecourse1 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3662 and Psest_3663 are separated by 1 nucleotidesPsest_3663 and Psest_3664 overlap by 4 nucleotidesPsest_3664 and Psest_3665 are separated by 90 nucleotides Psest_3662: Psest_3662 - DnaJ-domain-containing proteins 1, at 3,824,733 to 3,825,500 _3662 Psest_3663: Psest_3663 - Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon), at 3,825,502 to 3,826,173 _3663 Psest_3664: Psest_3664 - Predicted phosphotransferase related to Ser/Thr protein kinases, at 3,826,170 to 3,827,228 _3664 Psest_3665: Psest_3665 - Organic solvent tolerance protein OstA, at 3,827,319 to 3,830,111 _3665 Position (kb) 3826 3827 3828Strain fitness (log2 ratio) -2 -1 0 1at 3825.267 kb on - strand, within Psest_3662at 3825.520 kb on + strandat 3825.520 kb on + strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3826.256 kb on - strandat 3826.708 kb on + strand, within Psest_3664at 3826.861 kb on + strand, within Psest_3664at 3826.861 kb on + strand, within Psest_3664at 3826.862 kb on - strand, within Psest_3664

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose defined 30C timecourse1 timepoint 2
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3,825,267 - Psest_3662 0.70 +0.6
3,825,520 + -0.5
3,825,520 + -0.5
3,825,521 - -0.4
3,825,521 - -1.4
3,825,521 - -0.0
3,825,521 - -0.4
3,825,521 - +0.6
3,826,256 - +0.1
3,826,708 + Psest_3664 0.51 -2.2
3,826,861 + Psest_3664 0.65 +1.0
3,826,861 + Psest_3664 0.65 -1.4
3,826,862 - Psest_3664 0.65 -1.6

Or see this region's nucleotide sequence