Experiment: m.b. Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3514 and HP15_3515 are separated by 20 nucleotides HP15_3515 and HP15_3516 are separated by 118 nucleotides HP15_3516 and HP15_3517 are separated by 27 nucleotides HP15_3517 and HP15_3518 are separated by 11 nucleotides
HP15_3514: HP15_3514 - response regulator receiver domain protein (CheY), at 3,696,500 to 3,696,862
_3514
HP15_3515: HP15_3515 - chemotaxis signal transduction protein, at 3,696,883 to 3,697,428
_3515
HP15_3516: HP15_3516 - methyl-accepting chemotaxis sensory transducer, at 3,697,547 to 3,699,595
_3516
HP15_3517: HP15_3517 - protein-glutamate O-methyltransferase, at 3,699,623 to 3,700,522
_3517
HP15_3518: HP15_3518 - CheA signal transduction histidine kinase, at 3,700,534 to 3,708,128
_3518
Position (kb)
3697
3698
3699
3700 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3696.568 kb on + strand, within HP15_3514 at 3696.590 kb on + strand, within HP15_3514 at 3696.590 kb on + strand, within HP15_3514 at 3696.678 kb on + strand, within HP15_3514 at 3696.678 kb on + strand, within HP15_3514 at 3696.708 kb on - strand, within HP15_3514 at 3696.974 kb on + strand, within HP15_3515 at 3696.982 kb on - strand, within HP15_3515 at 3697.085 kb on + strand, within HP15_3515 at 3697.087 kb on - strand, within HP15_3515 at 3697.379 kb on - strand at 3697.389 kb on + strand at 3697.422 kb on + strand at 3697.422 kb on + strand at 3697.438 kb on - strand at 3697.472 kb on - strand at 3697.553 kb on - strand at 3697.553 kb on - strand at 3697.625 kb on - strand at 3697.645 kb on + strand at 3697.655 kb on + strand at 3697.683 kb on + strand at 3697.722 kb on - strand at 3697.752 kb on + strand, within HP15_3516 at 3697.797 kb on - strand, within HP15_3516 at 3697.855 kb on - strand, within HP15_3516 at 3697.881 kb on - strand, within HP15_3516 at 3697.940 kb on - strand, within HP15_3516 at 3697.940 kb on - strand, within HP15_3516 at 3698.043 kb on + strand, within HP15_3516 at 3698.046 kb on - strand, within HP15_3516 at 3698.046 kb on - strand, within HP15_3516 at 3698.159 kb on - strand, within HP15_3516 at 3698.185 kb on + strand, within HP15_3516 at 3698.218 kb on + strand, within HP15_3516 at 3698.307 kb on - strand, within HP15_3516 at 3698.418 kb on + strand, within HP15_3516 at 3698.438 kb on + strand, within HP15_3516 at 3698.446 kb on - strand, within HP15_3516 at 3698.446 kb on - strand, within HP15_3516 at 3698.495 kb on + strand, within HP15_3516 at 3698.498 kb on - strand, within HP15_3516 at 3698.503 kb on - strand, within HP15_3516 at 3698.510 kb on + strand, within HP15_3516 at 3698.518 kb on - strand, within HP15_3516 at 3698.567 kb on - strand, within HP15_3516 at 3698.636 kb on + strand, within HP15_3516 at 3698.699 kb on - strand, within HP15_3516 at 3698.703 kb on - strand, within HP15_3516 at 3698.747 kb on + strand, within HP15_3516 at 3698.747 kb on + strand, within HP15_3516 at 3698.867 kb on + strand, within HP15_3516 at 3698.935 kb on - strand, within HP15_3516 at 3698.935 kb on - strand, within HP15_3516 at 3698.954 kb on - strand, within HP15_3516 at 3698.989 kb on + strand, within HP15_3516 at 3698.997 kb on - strand, within HP15_3516 at 3699.030 kb on + strand, within HP15_3516 at 3699.030 kb on + strand, within HP15_3516 at 3699.199 kb on + strand, within HP15_3516 at 3699.207 kb on - strand, within HP15_3516 at 3699.207 kb on - strand, within HP15_3516 at 3699.263 kb on - strand, within HP15_3516 at 3699.287 kb on - strand, within HP15_3516 at 3699.387 kb on - strand, within HP15_3516 at 3699.522 kb on + strand at 3699.563 kb on + strand at 3699.669 kb on - strand at 3699.754 kb on - strand, within HP15_3517 at 3699.827 kb on - strand, within HP15_3517 at 3700.001 kb on - strand, within HP15_3517 at 3700.033 kb on + strand, within HP15_3517 at 3700.041 kb on - strand, within HP15_3517 at 3700.041 kb on - strand, within HP15_3517 at 3700.041 kb on - strand, within HP15_3517 at 3700.041 kb on - strand, within HP15_3517 at 3700.171 kb on + strand, within HP15_3517 at 3700.230 kb on - strand, within HP15_3517 at 3700.257 kb on + strand, within HP15_3517 at 3700.288 kb on - strand, within HP15_3517 at 3700.418 kb on + strand, within HP15_3517 at 3700.451 kb on + strand at 3700.465 kb on - strand at 3700.492 kb on - strand at 3700.531 kb on + strand at 3700.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM remove 3,696,568 + HP15_3514 0.19 +2.1 3,696,590 + HP15_3514 0.25 +2.2 3,696,590 + HP15_3514 0.25 +2.1 3,696,678 + HP15_3514 0.49 +2.9 3,696,678 + HP15_3514 0.49 +2.5 3,696,708 - HP15_3514 0.57 +2.0 3,696,974 + HP15_3515 0.17 +1.1 3,696,982 - HP15_3515 0.18 +1.9 3,697,085 + HP15_3515 0.37 +0.4 3,697,087 - HP15_3515 0.37 +0.9 3,697,379 - +1.5 3,697,389 + -0.2 3,697,422 + +0.7 3,697,422 + -0.3 3,697,438 - +0.7 3,697,472 - +0.2 3,697,553 - +2.5 3,697,553 - +1.2 3,697,625 - +2.9 3,697,645 + +0.4 3,697,655 + +0.8 3,697,683 + +1.4 3,697,722 - +0.9 3,697,752 + HP15_3516 0.10 +1.1 3,697,797 - HP15_3516 0.12 +1.3 3,697,855 - HP15_3516 0.15 +1.5 3,697,881 - HP15_3516 0.16 +1.4 3,697,940 - HP15_3516 0.19 +1.9 3,697,940 - HP15_3516 0.19 +1.2 3,698,043 + HP15_3516 0.24 +0.9 3,698,046 - HP15_3516 0.24 +1.5 3,698,046 - HP15_3516 0.24 +1.1 3,698,159 - HP15_3516 0.30 +1.2 3,698,185 + HP15_3516 0.31 +0.8 3,698,218 + HP15_3516 0.33 +0.4 3,698,307 - HP15_3516 0.37 +1.0 3,698,418 + HP15_3516 0.43 +0.7 3,698,438 + HP15_3516 0.43 +0.8 3,698,446 - HP15_3516 0.44 +1.2 3,698,446 - HP15_3516 0.44 +1.2 3,698,495 + HP15_3516 0.46 +0.6 3,698,498 - HP15_3516 0.46 +1.8 3,698,503 - HP15_3516 0.47 +0.5 3,698,510 + HP15_3516 0.47 +0.8 3,698,518 - HP15_3516 0.47 +1.4 3,698,567 - HP15_3516 0.50 +1.4 3,698,636 + HP15_3516 0.53 +0.1 3,698,699 - HP15_3516 0.56 +1.5 3,698,703 - HP15_3516 0.56 +1.5 3,698,747 + HP15_3516 0.59 +0.7 3,698,747 + HP15_3516 0.59 +0.2 3,698,867 + HP15_3516 0.64 +0.6 3,698,935 - HP15_3516 0.68 +0.6 3,698,935 - HP15_3516 0.68 +1.4 3,698,954 - HP15_3516 0.69 +1.5 3,698,989 + HP15_3516 0.70 +0.8 3,698,997 - HP15_3516 0.71 +1.3 3,699,030 + HP15_3516 0.72 -0.0 3,699,030 + HP15_3516 0.72 +0.4 3,699,199 + HP15_3516 0.81 +0.2 3,699,207 - HP15_3516 0.81 +0.8 3,699,207 - HP15_3516 0.81 +0.2 3,699,263 - HP15_3516 0.84 +1.7 3,699,287 - HP15_3516 0.85 +1.0 3,699,387 - HP15_3516 0.90 +0.5 3,699,522 + +0.8 3,699,563 + -0.4 3,699,669 - -0.1 3,699,754 - HP15_3517 0.15 -0.1 3,699,827 - HP15_3517 0.23 +0.4 3,700,001 - HP15_3517 0.42 +0.4 3,700,033 + HP15_3517 0.46 -0.3 3,700,041 - HP15_3517 0.46 +0.4 3,700,041 - HP15_3517 0.46 +0.1 3,700,041 - HP15_3517 0.46 -0.1 3,700,041 - HP15_3517 0.46 -0.3 3,700,171 + HP15_3517 0.61 -0.5 3,700,230 - HP15_3517 0.67 -0.4 3,700,257 + HP15_3517 0.70 -0.7 3,700,288 - HP15_3517 0.74 +0.3 3,700,418 + HP15_3517 0.88 +0.5 3,700,451 + +0.9 3,700,465 - +0.4 3,700,492 - +0.0 3,700,531 + -0.7 3,700,590 - +1.2
Or see this region's nucleotide sequence