Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3377

Experiment: Glucose defined 30C timecourse1 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3376 and Psest_3377 are separated by 119 nucleotidesPsest_3377 and Psest_3378 overlap by 8 nucleotidesPsest_3378 and Psest_3379 are separated by 36 nucleotides Psest_3376: Psest_3376 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming), at 3,546,053 to 3,546,997 _3376 Psest_3377: Psest_3377 - FKBP-type peptidyl-prolyl cis-trans isomerases 2, at 3,547,117 to 3,547,554 _3377 Psest_3378: Psest_3378 - lipoprotein signal peptidase, at 3,547,547 to 3,548,050 _3378 Psest_3379: Psest_3379 - isoleucyl-tRNA synthetase, at 3,548,087 to 3,550,918 _3379 Position (kb) 3547 3548Strain fitness (log2 ratio) -1 0 1at 3547.038 kb on + strandat 3547.038 kb on + strandat 3547.397 kb on + strand, within Psest_3377

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose defined 30C timecourse1 timepoint 2
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3,547,038 + -0.6
3,547,038 + -1.2
3,547,397 + Psest_3377 0.64 +0.5

Or see this region's nucleotide sequence