Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0307

Experiment: Glucose defined 30C timecourse1 timepoint 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0306 and Psest_0307 are separated by 161 nucleotidesPsest_0307 and Psest_0308 are separated by 25 nucleotidesPsest_0308 and Psest_0309 are separated by 262 nucleotides Psest_0306: Psest_0306 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 325,357 to 326,760 _0306 Psest_0307: Psest_0307 - Cytochrome B561, at 326,922 to 327,476 _0307 Psest_0308: Psest_0308 - Uncharacterized conserved protein, at 327,502 to 328,077 _0308 Psest_0309: Psest_0309 - RND family efflux transporter, MFP subunit, at 328,340 to 329,482 _0309 Position (kb) 326 327 328Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 326.018 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.316 kb on - strand, within Psest_0306at 326.316 kb on - strand, within Psest_0306at 326.395 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.426 kb on + strand, within Psest_0306at 326.427 kb on - strand, within Psest_0306at 326.427 kb on - strand, within Psest_0306at 326.427 kb on - strand, within Psest_0306at 326.427 kb on - strand, within Psest_0306at 326.485 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.533 kb on + strand, within Psest_0306at 326.534 kb on - strand, within Psest_0306at 326.534 kb on - strand, within Psest_0306at 326.534 kb on - strand, within Psest_0306at 326.534 kb on - strand, within Psest_0306at 326.581 kb on + strand, within Psest_0306at 326.581 kb on + strand, within Psest_0306at 326.581 kb on + strand, within Psest_0306at 326.581 kb on + strand, within Psest_0306at 326.582 kb on - strand, within Psest_0306at 326.582 kb on - strand, within Psest_0306at 326.791 kb on + strandat 326.896 kb on - strandat 326.933 kb on + strandat 326.934 kb on - strandat 326.949 kb on + strandat 326.949 kb on + strandat 326.949 kb on + strandat 326.949 kb on + strandat 326.950 kb on - strandat 326.950 kb on - strandat 327.018 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.039 kb on + strand, within Psest_0307at 327.040 kb on - strand, within Psest_0307at 327.042 kb on + strand, within Psest_0307at 327.042 kb on + strand, within Psest_0307at 327.042 kb on + strand, within Psest_0307at 327.043 kb on - strand, within Psest_0307at 327.134 kb on + strand, within Psest_0307at 327.134 kb on + strand, within Psest_0307at 327.213 kb on + strand, within Psest_0307at 327.213 kb on + strand, within Psest_0307at 327.213 kb on + strand, within Psest_0307at 327.213 kb on + strand, within Psest_0307at 327.360 kb on + strand, within Psest_0307at 327.361 kb on - strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.394 kb on + strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.395 kb on - strand, within Psest_0307at 327.634 kb on + strand, within Psest_0308at 327.634 kb on + strand, within Psest_0308at 328.071 kb on + strandat 328.071 kb on + strandat 328.072 kb on - strandat 328.075 kb on + strandat 328.075 kb on + strandat 328.075 kb on + strandat 328.075 kb on + strandat 328.075 kb on + strandat 328.075 kb on + strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.076 kb on - strandat 328.087 kb on - strandat 328.171 kb on + strandat 328.171 kb on + strandat 328.171 kb on + strandat 328.172 kb on - strandat 328.172 kb on - strandat 328.207 kb on + strandat 328.207 kb on + strandat 328.207 kb on + strandat 328.207 kb on + strandat 328.207 kb on + strandat 328.207 kb on + strandat 328.207 kb on + strandat 328.208 kb on - strandat 328.208 kb on - strandat 328.254 kb on + strandat 328.254 kb on + strandat 328.254 kb on + strandat 328.254 kb on + strandat 328.254 kb on + strandat 328.254 kb on + strandat 328.254 kb on + strandat 328.254 kb on + strandat 328.255 kb on - strandat 328.258 kb on + strandat 328.258 kb on + strandat 328.260 kb on + strandat 328.260 kb on + strandat 328.260 kb on + strandat 328.261 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucose defined 30C timecourse1 timepoint 2
remove
326,018 + Psest_0306 0.47 -1.0
326,063 + Psest_0306 0.50 -0.2
326,063 + Psest_0306 0.50 -0.9
326,063 + Psest_0306 0.50 -0.6
326,063 + Psest_0306 0.50 -1.1
326,063 + Psest_0306 0.50 -1.8
326,063 + Psest_0306 0.50 -1.2
326,063 + Psest_0306 0.50 +0.3
326,064 - Psest_0306 0.50 -1.4
326,064 - Psest_0306 0.50 -1.3
326,064 - Psest_0306 0.50 -1.6
326,064 - Psest_0306 0.50 -0.8
326,064 - Psest_0306 0.50 -0.4
326,064 - Psest_0306 0.50 -0.1
326,064 - Psest_0306 0.50 -1.1
326,255 + Psest_0306 0.64 -1.1
326,255 + Psest_0306 0.64 -0.6
326,255 + Psest_0306 0.64 +0.0
326,255 + Psest_0306 0.64 -1.1
326,255 + Psest_0306 0.64 -1.8
326,255 + Psest_0306 0.64 +0.0
326,255 + Psest_0306 0.64 -0.3
326,255 + Psest_0306 0.64 +0.3
326,256 - Psest_0306 0.64 -0.6
326,256 - Psest_0306 0.64 -0.7
326,256 - Psest_0306 0.64 -1.6
326,256 - Psest_0306 0.64 +0.0
326,256 - Psest_0306 0.64 -0.8
326,256 - Psest_0306 0.64 -1.7
326,256 - Psest_0306 0.64 -1.3
326,256 - Psest_0306 0.64 -0.4
326,316 - Psest_0306 0.68 -0.4
326,316 - Psest_0306 0.68 -0.7
326,395 + Psest_0306 0.74 -1.3
326,426 + Psest_0306 0.76 -0.4
326,426 + Psest_0306 0.76 +0.4
326,426 + Psest_0306 0.76 -0.2
326,426 + Psest_0306 0.76 -1.5
326,426 + Psest_0306 0.76 -2.8
326,426 + Psest_0306 0.76 -1.4
326,426 + Psest_0306 0.76 -1.6
326,426 + Psest_0306 0.76 -1.1
326,427 - Psest_0306 0.76 -1.2
326,427 - Psest_0306 0.76 -0.7
326,427 - Psest_0306 0.76 -1.0
326,427 - Psest_0306 0.76 +0.2
326,485 + Psest_0306 0.80 -1.1
326,533 + Psest_0306 0.84 +0.4
326,533 + Psest_0306 0.84 -2.3
326,533 + Psest_0306 0.84 -0.6
326,533 + Psest_0306 0.84 -0.8
326,533 + Psest_0306 0.84 -1.8
326,533 + Psest_0306 0.84 -1.4
326,533 + Psest_0306 0.84 -0.9
326,533 + Psest_0306 0.84 -0.6
326,533 + Psest_0306 0.84 -1.0
326,534 - Psest_0306 0.84 -0.7
326,534 - Psest_0306 0.84 -0.6
326,534 - Psest_0306 0.84 -0.2
326,534 - Psest_0306 0.84 -1.6
326,581 + Psest_0306 0.87 -2.2
326,581 + Psest_0306 0.87 -0.9
326,581 + Psest_0306 0.87 -2.8
326,581 + Psest_0306 0.87 -2.6
326,582 - Psest_0306 0.87 -1.7
326,582 - Psest_0306 0.87 -0.7
326,791 + -1.5
326,896 - +0.2
326,933 + -0.1
326,934 - +0.3
326,949 + -0.0
326,949 + -1.3
326,949 + +0.0
326,949 + +0.2
326,950 - -0.1
326,950 - -0.7
327,018 + Psest_0307 0.17 -0.4
327,039 + Psest_0307 0.21 -0.1
327,039 + Psest_0307 0.21 -0.0
327,039 + Psest_0307 0.21 +0.3
327,039 + Psest_0307 0.21 -0.6
327,039 + Psest_0307 0.21 +0.4
327,039 + Psest_0307 0.21 -0.2
327,040 - Psest_0307 0.21 +0.4
327,042 + Psest_0307 0.22 -0.3
327,042 + Psest_0307 0.22 -0.2
327,042 + Psest_0307 0.22 -0.1
327,043 - Psest_0307 0.22 +0.0
327,134 + Psest_0307 0.38 +0.0
327,134 + Psest_0307 0.38 +0.0
327,213 + Psest_0307 0.52 +0.0
327,213 + Psest_0307 0.52 -0.4
327,213 + Psest_0307 0.52 +0.4
327,213 + Psest_0307 0.52 -0.1
327,360 + Psest_0307 0.79 -0.1
327,361 - Psest_0307 0.79 -0.4
327,394 + Psest_0307 0.85 +0.7
327,394 + Psest_0307 0.85 +0.2
327,394 + Psest_0307 0.85 -0.3
327,394 + Psest_0307 0.85 +0.1
327,394 + Psest_0307 0.85 -0.2
327,394 + Psest_0307 0.85 -0.1
327,394 + Psest_0307 0.85 -0.4
327,394 + Psest_0307 0.85 +0.3
327,395 - Psest_0307 0.85 +2.6
327,395 - Psest_0307 0.85 +0.2
327,395 - Psest_0307 0.85 -0.2
327,395 - Psest_0307 0.85 -0.1
327,395 - Psest_0307 0.85 -0.4
327,395 - Psest_0307 0.85 +0.9
327,395 - Psest_0307 0.85 +0.8
327,634 + Psest_0308 0.23 +0.7
327,634 + Psest_0308 0.23 +2.6
328,071 + +1.0
328,071 + +0.5
328,072 - -0.1
328,075 + +0.5
328,075 + -1.7
328,075 + -0.7
328,075 + -1.0
328,075 + +0.0
328,075 + -0.4
328,076 - +0.2
328,076 - -0.4
328,076 - +1.0
328,076 - -1.7
328,076 - +1.7
328,076 - +0.0
328,076 - -0.1
328,076 - +1.0
328,076 - +0.8
328,076 - +0.6
328,076 - +0.6
328,076 - +0.5
328,087 - -1.0
328,171 + -1.6
328,171 + -1.0
328,171 + -0.4
328,172 - -0.7
328,172 - -0.7
328,207 + -1.7
328,207 + +0.1
328,207 + +0.2
328,207 + +0.3
328,207 + -0.2
328,207 + -0.9
328,207 + -0.1
328,208 - -0.1
328,208 - +0.5
328,254 + +1.0
328,254 + -0.3
328,254 + -0.6
328,254 + +0.2
328,254 + -0.6
328,254 + +0.9
328,254 + +1.0
328,254 + -0.5
328,255 - -1.1
328,258 + +0.1
328,258 + -0.1
328,260 + -0.3
328,260 + +0.0
328,260 + +0.3
328,261 - +0.6

Or see this region's nucleotide sequence