Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29600

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
3,093,787	-		PGA1_c29580	0.48	+0.5
3,093,808	+		PGA1_c29580	0.50	-1.1
3,093,808	+		PGA1_c29580	0.50	-1.0
3,093,816	-		PGA1_c29580	0.50	-1.5
3,093,816	-		PGA1_c29580	0.50	+0.4
3,093,816	-		PGA1_c29580	0.50	-2.2
3,093,866	-		PGA1_c29580	0.55	-1.0
3,093,890	+		PGA1_c29580	0.57	-1.0
3,093,890	+		PGA1_c29580	0.57	+0.5
3,093,890	+		PGA1_c29580	0.57	-0.9
3,093,890	+		PGA1_c29580	0.57	-0.4
3,093,898	-		PGA1_c29580	0.58	-0.1
3,093,907	+		PGA1_c29580	0.59	-0.9
3,094,019	-		PGA1_c29580	0.69	-0.3
3,094,019	-		PGA1_c29580	0.69	-0.0
3,094,019	-		PGA1_c29580	0.69	+0.3
3,094,019	-		PGA1_c29580	0.69	+0.1
3,094,070	+		PGA1_c29580	0.73	-0.5
3,094,137	+		PGA1_c29580	0.79	-0.7
3,094,199	+		PGA1_c29580	0.85	+0.0
3,094,206	+		PGA1_c29580	0.85	+0.5
3,094,212	-		PGA1_c29580	0.86	-1.1
3,094,214	-		PGA1_c29580	0.86	-0.5
3,094,273	-				-0.8
3,094,412	+				-2.2
3,094,449	+				-0.0
3,094,470	+				-0.5
3,094,470	+				-0.2
3,094,470	+				-3.1
3,094,478	-				+0.3
3,094,483	+				-0.6
3,094,488	+				-0.2
3,094,491	-				-0.8
3,094,498	+				-0.4
3,094,524	+				-0.0
3,094,524	+				-0.1
3,094,539	+				-1.2
3,094,539	+				+0.6
3,094,539	+				+0.4
3,094,539	+				-0.9
3,094,539	+				+0.3
3,094,539	+				+0.2
3,094,539	+				-0.3
3,094,539	+				-1.4
3,094,539	+				-0.6
3,094,539	+				-0.2
3,094,539	+				-0.3
3,094,539	+				-1.2
3,094,539	+				+0.3
3,094,547	-				-0.8
3,094,547	-				-0.7
3,094,547	-				-0.8
3,094,547	-				-0.8
3,094,547	-				-0.5
3,094,558	-				+0.0
3,094,574	+				-0.4
3,094,576	+				-1.0
3,094,584	-				-0.5
3,094,584	-				+0.8
3,094,584	-				+0.1
3,094,631	+		PGA1_c29590	0.32	-0.4
3,094,676	-		PGA1_c29590	0.55	+0.7
3,094,706	+		PGA1_c29590	0.70	+0.4
3,094,712	+		PGA1_c29590	0.73	-0.1
3,094,712	+		PGA1_c29590	0.73	+0.2
3,094,712	+		PGA1_c29590	0.73	-0.3
3,094,714	-		PGA1_c29590	0.74	+0.1
3,094,722	+		PGA1_c29590	0.78	+1.0
3,094,722	+		PGA1_c29590	0.78	-0.3
3,094,722	+		PGA1_c29590	0.78	-0.2
3,094,722	+		PGA1_c29590	0.78	-0.3
3,094,722	+		PGA1_c29590	0.78	+0.0
3,094,722	+		PGA1_c29590	0.78	-0.5
3,094,722	+		PGA1_c29590	0.78	+0.2
3,094,722	+		PGA1_c29590	0.78	-0.4
3,094,730	-		PGA1_c29590	0.83	+0.0
3,094,730	-		PGA1_c29590	0.83	-0.6
3,094,756	-				-1.2
3,094,773	+				+0.4
3,094,781	-				-1.2
3,094,836	+				-0.8
3,094,865	+				-0.7
3,094,869	+				+0.3
3,094,875	+				-0.2
3,094,995	+		PGA1_c29600	0.21	-0.4
3,095,003	+		PGA1_c29600	0.21	-1.1
3,095,055	-		PGA1_c29600	0.26	-0.4
3,095,132	+		PGA1_c29600	0.33	-0.4
3,095,141	-		PGA1_c29600	0.34	-0.9
3,095,156	-		PGA1_c29600	0.35	-1.3
3,095,163	+		PGA1_c29600	0.36	+0.1
3,095,187	+		PGA1_c29600	0.38	-0.6
3,095,246	-		PGA1_c29600	0.43	+0.0
3,095,368	+		PGA1_c29600	0.54	-0.6
3,095,386	+		PGA1_c29600	0.56	+0.5
3,095,408	-		PGA1_c29600	0.58	-1.8
3,095,455	+		PGA1_c29600	0.62	-2.2
3,095,515	-		PGA1_c29600	0.67	-1.3
3,095,687	+		PGA1_c29600	0.83	-0.0
3,095,687	+		PGA1_c29600	0.83	-0.5
3,095,759	-		PGA1_c29600	0.89	-1.2
3,095,798	+				+0.2
3,095,807	-				-0.7
3,095,813	+				-0.8
3,095,813	+				-0.4
3,095,863	+				-0.6
3,095,946	+				-0.8
3,095,946	+				-0.7
3,095,946	+				+0.4
3,095,946	+				-1.4
3,095,946	+				-0.3
3,095,952	-				-1.1
3,095,954	-				-0.3
3,095,954	-				+0.5
3,095,954	-				-1.0
3,095,954	-				-0.0
3,095,954	-				+0.2
3,095,954	-				-0.8
3,095,954	-				+0.2
3,095,954	-				-0.1
3,095,956	+				+0.2
3,095,969	-				+0.4
3,095,999	+				+0.2
3,096,007	-				+0.2
3,096,108	-				-1.0
3,096,145	+		PGA1_c29610	0.12	-1.9
3,096,147	+		PGA1_c29610	0.13	+0.1
3,096,155	+		PGA1_c29610	0.14	-0.3
3,096,155	+		PGA1_c29610	0.14	-1.4
3,096,162	+		PGA1_c29610	0.15	-1.0
3,096,163	-		PGA1_c29610	0.15	-0.4
3,096,165	-		PGA1_c29610	0.16	-1.4
3,096,290	+		PGA1_c29610	0.36	-0.5
3,096,314	+		PGA1_c29610	0.39	-1.7
3,096,314	+		PGA1_c29610	0.39	-0.8
3,096,322	-		PGA1_c29610	0.41	-0.4
3,096,384	-		PGA1_c29610	0.51	-1.3
3,096,423	+		PGA1_c29610	0.57	+0.0
3,096,423	+		PGA1_c29610	0.57	-0.9
3,096,436	-		PGA1_c29610	0.59	-1.7
3,096,436	-		PGA1_c29610	0.59	-0.7
3,096,490	+		PGA1_c29610	0.67	-0.9
3,096,523	-		PGA1_c29610	0.73	-0.8
3,096,527	+		PGA1_c29610	0.73	-0.2
3,096,527	+		PGA1_c29610	0.73	-1.3
3,096,532	+		PGA1_c29610	0.74	+0.3
3,096,532	+		PGA1_c29610	0.74	+0.1
3,096,532	+		PGA1_c29610	0.74	-2.1
3,096,532	+		PGA1_c29610	0.74	-1.6
3,096,535	-		PGA1_c29610	0.75	+1.5
3,096,535	-		PGA1_c29610	0.75	-0.7
3,096,540	-		PGA1_c29610	0.75	-1.7
3,096,540	-		PGA1_c29610	0.75	+0.2
3,096,540	-		PGA1_c29610	0.75	-0.9
3,096,545	-		PGA1_c29610	0.76	-0.2
3,096,559	-		PGA1_c29610	0.78	+0.3
3,096,592	+		PGA1_c29610	0.84	-1.0
3,096,599	+		PGA1_c29610	0.85	-0.7
3,096,600	-		PGA1_c29610	0.85	-0.0
3,096,607	-		PGA1_c29610	0.86	-0.2
3,096,640	+				+0.4
3,096,680	+				+0.2
3,096,680	+				-1.6
3,096,701	+				+0.2
3,096,701	+				-0.7
3,096,701	+				-0.8
3,096,709	-				-1.2
3,096,709	-				-0.3
3,096,747	+				-2.9
3,096,749	+				-1.2
3,096,754	+				-1.6
3,096,785	-				-1.0
3,096,808	+		PGA1_c29620	0.13	-1.8
3,096,816	-		PGA1_c29620	0.14	-1.8