Strain Fitness in Marinobacter adhaerens HP15 around HP15_2445

Experiment: m.b. Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2442 and HP15_2443 are separated by 100 nucleotidesHP15_2443 and HP15_2444 are separated by 87 nucleotidesHP15_2444 and HP15_2445 are separated by 22 nucleotidesHP15_2445 and HP15_2446 are separated by 7 nucleotidesHP15_2446 and HP15_2447 are separated by 94 nucleotides HP15_2442: HP15_2442 - RNA polymerase, sigma 54 subunit, RpoN, at 2,579,904 to 2,581,430 _2442 HP15_2443: HP15_2443 - sigma 54 modulation protein/ribosomal protein S30EA, at 2,581,531 to 2,581,839 _2443 HP15_2444: HP15_2444 - PTS IIA-like nitrogen-regulatory protein PtsN, at 2,581,927 to 2,582,397 _2444 HP15_2445: HP15_2445 - protein yhbJ, at 2,582,420 to 2,583,310 _2445 HP15_2446: HP15_2446 - phosphotransferase system, phosphocarrier protein Hpr, at 2,583,318 to 2,583,587 _2446 HP15_2447: HP15_2447 - magnesium transporter, at 2,583,682 to 2,585,043 _2447 Position (kb) 2582 2583 2584Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2581.452 kb on - strandat 2581.556 kb on + strandat 2581.710 kb on + strand, within HP15_2443at 2582.528 kb on + strand, within HP15_2445at 2582.574 kb on - strand, within HP15_2445at 2582.858 kb on - strand, within HP15_2445at 2582.893 kb on - strand, within HP15_2445at 2583.009 kb on - strand, within HP15_2445at 2583.141 kb on - strand, within HP15_2445at 2583.199 kb on - strand, within HP15_2445at 2583.206 kb on + strand, within HP15_2445at 2583.255 kb on - strandat 2583.886 kb on + strand, within HP15_2447

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM
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2,581,452 - +4.7
2,581,556 + +1.5
2,581,710 + HP15_2443 0.58 +0.5
2,582,528 + HP15_2445 0.12 -0.2
2,582,574 - HP15_2445 0.17 +0.0
2,582,858 - HP15_2445 0.49 +0.3
2,582,893 - HP15_2445 0.53 -0.3
2,583,009 - HP15_2445 0.66 +1.3
2,583,141 - HP15_2445 0.81 +1.1
2,583,199 - HP15_2445 0.87 +1.3
2,583,206 + HP15_2445 0.88 +0.1
2,583,255 - +0.1
2,583,886 + HP15_2447 0.15 -2.2

Or see this region's nucleotide sequence