Strain Fitness in Marinobacter adhaerens HP15 around HP15_2354

Experiment: m.b. Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2352 and HP15_2353 are separated by 22 nucleotidesHP15_2353 and HP15_2354 are separated by 11 nucleotidesHP15_2354 and HP15_2355 are separated by 4 nucleotides HP15_2352: HP15_2352 - sensory box sensor/GGDEF/EAL domain protein, at 2,475,487 to 2,477,547 _2352 HP15_2353: HP15_2353 - LemA family protein, at 2,477,570 to 2,478,157 _2353 HP15_2354: HP15_2354 - peptidase M48, Ste24p, at 2,478,169 to 2,480,166 _2354 HP15_2355: HP15_2355 - type II and III secretion system protein, at 2,480,171 to 2,482,162 _2355 Position (kb) 2478 2479 2480 2481Strain fitness (log2 ratio) -2 -1 0 1 2at 2477.248 kb on + strand, within HP15_2352at 2477.371 kb on + strandat 2477.380 kb on - strandat 2477.380 kb on - strandat 2477.564 kb on - strandat 2477.564 kb on - strandat 2477.564 kb on - strandat 2477.638 kb on - strand, within HP15_2353at 2477.769 kb on + strand, within HP15_2353at 2477.866 kb on - strand, within HP15_2353at 2477.962 kb on + strand, within HP15_2353at 2478.010 kb on + strand, within HP15_2353at 2478.033 kb on + strand, within HP15_2353at 2478.207 kb on - strandat 2478.210 kb on + strandat 2478.215 kb on + strandat 2478.322 kb on - strandat 2478.415 kb on - strand, within HP15_2354at 2479.008 kb on + strand, within HP15_2354at 2479.118 kb on + strand, within HP15_2354at 2479.128 kb on + strand, within HP15_2354at 2479.151 kb on - strand, within HP15_2354at 2479.178 kb on - strand, within HP15_2354at 2479.178 kb on - strand, within HP15_2354at 2479.182 kb on - strand, within HP15_2354at 2479.237 kb on - strand, within HP15_2354at 2479.237 kb on - strand, within HP15_2354at 2479.385 kb on - strand, within HP15_2354at 2479.456 kb on + strand, within HP15_2354at 2479.467 kb on + strand, within HP15_2354at 2479.467 kb on + strand, within HP15_2354at 2479.498 kb on - strand, within HP15_2354at 2479.543 kb on - strand, within HP15_2354at 2479.569 kb on - strand, within HP15_2354at 2479.639 kb on + strand, within HP15_2354at 2479.655 kb on + strand, within HP15_2354at 2479.655 kb on + strand, within HP15_2354at 2479.840 kb on + strand, within HP15_2354at 2479.858 kb on + strand, within HP15_2354at 2479.955 kb on + strand, within HP15_2354at 2480.010 kb on - strandat 2480.021 kb on + strandat 2480.021 kb on + strandat 2480.050 kb on + strandat 2480.057 kb on + strandat 2480.250 kb on + strandat 2480.626 kb on + strand, within HP15_2355at 2480.634 kb on - strand, within HP15_2355at 2480.710 kb on + strand, within HP15_2355at 2480.713 kb on - strand, within HP15_2355at 2480.732 kb on - strand, within HP15_2355at 2480.767 kb on + strand, within HP15_2355at 2480.767 kb on + strand, within HP15_2355at 2480.808 kb on + strand, within HP15_2355at 2480.866 kb on - strand, within HP15_2355at 2481.021 kb on + strand, within HP15_2355

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM
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2,477,248 + HP15_2352 0.85 -0.2
2,477,371 + +0.3
2,477,380 - -0.9
2,477,380 - -0.4
2,477,564 - -0.1
2,477,564 - -0.8
2,477,564 - +0.1
2,477,638 - HP15_2353 0.12 -0.2
2,477,769 + HP15_2353 0.34 +1.8
2,477,866 - HP15_2353 0.50 -0.6
2,477,962 + HP15_2353 0.67 +0.6
2,478,010 + HP15_2353 0.75 +0.1
2,478,033 + HP15_2353 0.79 +0.1
2,478,207 - -0.7
2,478,210 + +0.4
2,478,215 + +0.2
2,478,322 - -0.2
2,478,415 - HP15_2354 0.12 -0.6
2,479,008 + HP15_2354 0.42 +0.0
2,479,118 + HP15_2354 0.47 -1.2
2,479,128 + HP15_2354 0.48 +0.7
2,479,151 - HP15_2354 0.49 +0.6
2,479,178 - HP15_2354 0.51 -1.2
2,479,178 - HP15_2354 0.51 -1.0
2,479,182 - HP15_2354 0.51 -1.8
2,479,237 - HP15_2354 0.53 -0.2
2,479,237 - HP15_2354 0.53 +0.1
2,479,385 - HP15_2354 0.61 -0.3
2,479,456 + HP15_2354 0.64 -1.3
2,479,467 + HP15_2354 0.65 +0.1
2,479,467 + HP15_2354 0.65 -0.1
2,479,498 - HP15_2354 0.67 -0.6
2,479,543 - HP15_2354 0.69 -0.3
2,479,569 - HP15_2354 0.70 -0.4
2,479,639 + HP15_2354 0.74 -0.5
2,479,655 + HP15_2354 0.74 +0.2
2,479,655 + HP15_2354 0.74 +0.1
2,479,840 + HP15_2354 0.84 -0.7
2,479,858 + HP15_2354 0.85 +0.2
2,479,955 + HP15_2354 0.89 -0.6
2,480,010 - +0.2
2,480,021 + -0.5
2,480,021 + -0.5
2,480,050 + +0.2
2,480,057 + +0.0
2,480,250 + +0.7
2,480,626 + HP15_2355 0.23 -0.7
2,480,634 - HP15_2355 0.23 +1.5
2,480,710 + HP15_2355 0.27 -0.3
2,480,713 - HP15_2355 0.27 -0.1
2,480,732 - HP15_2355 0.28 +0.4
2,480,767 + HP15_2355 0.30 -0.9
2,480,767 + HP15_2355 0.30 +0.5
2,480,808 + HP15_2355 0.32 +0.3
2,480,866 - HP15_2355 0.35 -0.5
2,481,021 + HP15_2355 0.43 +0.5

Or see this region's nucleotide sequence