Experiment: m.b. Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2352 and HP15_2353 are separated by 22 nucleotides HP15_2353 and HP15_2354 are separated by 11 nucleotides HP15_2354 and HP15_2355 are separated by 4 nucleotides
HP15_2352: HP15_2352 - sensory box sensor/GGDEF/EAL domain protein, at 2,475,487 to 2,477,547
_2352
HP15_2353: HP15_2353 - LemA family protein, at 2,477,570 to 2,478,157
_2353
HP15_2354: HP15_2354 - peptidase M48, Ste24p, at 2,478,169 to 2,480,166
_2354
HP15_2355: HP15_2355 - type II and III secretion system protein, at 2,480,171 to 2,482,162
_2355
Position (kb)
2478
2479
2480
2481 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2477.248 kb on + strand, within HP15_2352 at 2477.371 kb on + strand at 2477.380 kb on - strand at 2477.380 kb on - strand at 2477.564 kb on - strand at 2477.564 kb on - strand at 2477.564 kb on - strand at 2477.638 kb on - strand, within HP15_2353 at 2477.769 kb on + strand, within HP15_2353 at 2477.866 kb on - strand, within HP15_2353 at 2477.962 kb on + strand, within HP15_2353 at 2478.010 kb on + strand, within HP15_2353 at 2478.033 kb on + strand, within HP15_2353 at 2478.207 kb on - strand at 2478.210 kb on + strand at 2478.215 kb on + strand at 2478.322 kb on - strand at 2478.415 kb on - strand, within HP15_2354 at 2479.008 kb on + strand, within HP15_2354 at 2479.118 kb on + strand, within HP15_2354 at 2479.128 kb on + strand, within HP15_2354 at 2479.151 kb on - strand, within HP15_2354 at 2479.178 kb on - strand, within HP15_2354 at 2479.178 kb on - strand, within HP15_2354 at 2479.182 kb on - strand, within HP15_2354 at 2479.237 kb on - strand, within HP15_2354 at 2479.237 kb on - strand, within HP15_2354 at 2479.385 kb on - strand, within HP15_2354 at 2479.456 kb on + strand, within HP15_2354 at 2479.467 kb on + strand, within HP15_2354 at 2479.467 kb on + strand, within HP15_2354 at 2479.498 kb on - strand, within HP15_2354 at 2479.543 kb on - strand, within HP15_2354 at 2479.569 kb on - strand, within HP15_2354 at 2479.639 kb on + strand, within HP15_2354 at 2479.655 kb on + strand, within HP15_2354 at 2479.655 kb on + strand, within HP15_2354 at 2479.840 kb on + strand, within HP15_2354 at 2479.858 kb on + strand, within HP15_2354 at 2479.955 kb on + strand, within HP15_2354 at 2480.010 kb on - strand at 2480.021 kb on + strand at 2480.021 kb on + strand at 2480.050 kb on + strand at 2480.057 kb on + strand at 2480.250 kb on + strand at 2480.626 kb on + strand, within HP15_2355 at 2480.634 kb on - strand, within HP15_2355 at 2480.710 kb on + strand, within HP15_2355 at 2480.713 kb on - strand, within HP15_2355 at 2480.732 kb on - strand, within HP15_2355 at 2480.767 kb on + strand, within HP15_2355 at 2480.767 kb on + strand, within HP15_2355 at 2480.808 kb on + strand, within HP15_2355 at 2480.866 kb on - strand, within HP15_2355 at 2481.021 kb on + strand, within HP15_2355
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM remove 2,477,248 + HP15_2352 0.85 -0.2 2,477,371 + +0.3 2,477,380 - -0.9 2,477,380 - -0.4 2,477,564 - -0.1 2,477,564 - -0.8 2,477,564 - +0.1 2,477,638 - HP15_2353 0.12 -0.2 2,477,769 + HP15_2353 0.34 +1.8 2,477,866 - HP15_2353 0.50 -0.6 2,477,962 + HP15_2353 0.67 +0.6 2,478,010 + HP15_2353 0.75 +0.1 2,478,033 + HP15_2353 0.79 +0.1 2,478,207 - -0.7 2,478,210 + +0.4 2,478,215 + +0.2 2,478,322 - -0.2 2,478,415 - HP15_2354 0.12 -0.6 2,479,008 + HP15_2354 0.42 +0.0 2,479,118 + HP15_2354 0.47 -1.2 2,479,128 + HP15_2354 0.48 +0.7 2,479,151 - HP15_2354 0.49 +0.6 2,479,178 - HP15_2354 0.51 -1.2 2,479,178 - HP15_2354 0.51 -1.0 2,479,182 - HP15_2354 0.51 -1.8 2,479,237 - HP15_2354 0.53 -0.2 2,479,237 - HP15_2354 0.53 +0.1 2,479,385 - HP15_2354 0.61 -0.3 2,479,456 + HP15_2354 0.64 -1.3 2,479,467 + HP15_2354 0.65 +0.1 2,479,467 + HP15_2354 0.65 -0.1 2,479,498 - HP15_2354 0.67 -0.6 2,479,543 - HP15_2354 0.69 -0.3 2,479,569 - HP15_2354 0.70 -0.4 2,479,639 + HP15_2354 0.74 -0.5 2,479,655 + HP15_2354 0.74 +0.2 2,479,655 + HP15_2354 0.74 +0.1 2,479,840 + HP15_2354 0.84 -0.7 2,479,858 + HP15_2354 0.85 +0.2 2,479,955 + HP15_2354 0.89 -0.6 2,480,010 - +0.2 2,480,021 + -0.5 2,480,021 + -0.5 2,480,050 + +0.2 2,480,057 + +0.0 2,480,250 + +0.7 2,480,626 + HP15_2355 0.23 -0.7 2,480,634 - HP15_2355 0.23 +1.5 2,480,710 + HP15_2355 0.27 -0.3 2,480,713 - HP15_2355 0.27 -0.1 2,480,732 - HP15_2355 0.28 +0.4 2,480,767 + HP15_2355 0.30 -0.9 2,480,767 + HP15_2355 0.30 +0.5 2,480,808 + HP15_2355 0.32 +0.3 2,480,866 - HP15_2355 0.35 -0.5 2,481,021 + HP15_2355 0.43 +0.5
Or see this region's nucleotide sequence