Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02140 and PGA1_c02150 are separated by 26 nucleotides PGA1_c02150 and PGA1_c02170 are separated by 398 nucleotides PGA1_c02170 and PGA1_c02180 are separated by 2 nucleotides
PGA1_c02140: PGA1_c02140 - putative ribonuclease P component, at 196,521 to 196,973
_c02140
PGA1_c02150: PGA1_c02150 - 50S ribosomal protein L34, at 197,000 to 197,134
_c02150
PGA1_c02170: PGA1_c02170 - Uncharacterized conserved protein, at 197,533 to 198,336
_c02170
PGA1_c02180: PGA1_c02180 - dihydrolipoyl dehydrogenase LpdA, at 198,339 to 199,760
_c02180
Position (kb) 197
198
199 Strain fitness (log2 ratio) -1
0
1
2 at 196.977 kb on + strand at 197.335 kb on + strand at 197.368 kb on + strand at 197.370 kb on - strand at 197.376 kb on - strand at 197.412 kb on - strand at 197.470 kb on - strand at 197.486 kb on + strand at 197.486 kb on + strand at 197.486 kb on + strand at 197.501 kb on + strand at 197.507 kb on + strand at 197.509 kb on - strand at 197.515 kb on - strand at 197.621 kb on + strand, within PGA1_c02170 at 197.621 kb on + strand, within PGA1_c02170 at 197.629 kb on - strand, within PGA1_c02170 at 197.629 kb on - strand, within PGA1_c02170 at 197.629 kb on - strand, within PGA1_c02170 at 197.681 kb on + strand, within PGA1_c02170 at 197.687 kb on + strand, within PGA1_c02170 at 197.771 kb on + strand, within PGA1_c02170 at 197.785 kb on + strand, within PGA1_c02170 at 197.785 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.792 kb on + strand, within PGA1_c02170 at 197.793 kb on - strand, within PGA1_c02170 at 197.867 kb on - strand, within PGA1_c02170 at 197.867 kb on - strand, within PGA1_c02170 at 197.942 kb on + strand, within PGA1_c02170 at 198.056 kb on - strand, within PGA1_c02170 at 198.096 kb on + strand, within PGA1_c02170 at 198.096 kb on + strand, within PGA1_c02170 at 198.104 kb on - strand, within PGA1_c02170 at 198.109 kb on - strand, within PGA1_c02170 at 198.109 kb on - strand, within PGA1_c02170 at 198.128 kb on - strand, within PGA1_c02170 at 198.168 kb on - strand, within PGA1_c02170 at 198.193 kb on + strand, within PGA1_c02170 at 198.201 kb on - strand, within PGA1_c02170 at 198.204 kb on + strand, within PGA1_c02170 at 198.220 kb on - strand, within PGA1_c02170 at 198.437 kb on + strand at 198.444 kb on + strand at 198.445 kb on - strand at 198.447 kb on + strand at 198.520 kb on + strand, within PGA1_c02180 at 198.525 kb on + strand, within PGA1_c02180 at 198.525 kb on + strand, within PGA1_c02180 at 198.525 kb on + strand, within PGA1_c02180 at 198.533 kb on - strand, within PGA1_c02180 at 198.538 kb on - strand, within PGA1_c02180 at 198.544 kb on - strand, within PGA1_c02180 at 198.558 kb on + strand, within PGA1_c02180 at 198.583 kb on - strand, within PGA1_c02180 at 198.601 kb on - strand, within PGA1_c02180 at 198.619 kb on + strand, within PGA1_c02180 at 198.635 kb on - strand, within PGA1_c02180 at 198.638 kb on - strand, within PGA1_c02180 at 198.663 kb on - strand, within PGA1_c02180 at 198.679 kb on + strand, within PGA1_c02180 at 198.725 kb on + strand, within PGA1_c02180 at 198.725 kb on + strand, within PGA1_c02180 at 198.817 kb on + strand, within PGA1_c02180 at 198.834 kb on - strand, within PGA1_c02180 at 198.834 kb on - strand, within PGA1_c02180 at 198.908 kb on - strand, within PGA1_c02180 at 198.909 kb on - strand, within PGA1_c02180 at 198.916 kb on + strand, within PGA1_c02180 at 198.953 kb on + strand, within PGA1_c02180 at 198.953 kb on + strand, within PGA1_c02180 at 199.034 kb on + strand, within PGA1_c02180 at 199.034 kb on + strand, within PGA1_c02180 at 199.042 kb on - strand, within PGA1_c02180 at 199.058 kb on + strand, within PGA1_c02180 at 199.108 kb on + strand, within PGA1_c02180 at 199.123 kb on - strand, within PGA1_c02180 at 199.158 kb on - strand, within PGA1_c02180 at 199.191 kb on + strand, within PGA1_c02180 at 199.192 kb on + strand, within PGA1_c02180 at 199.199 kb on - strand, within PGA1_c02180 at 199.240 kb on - strand, within PGA1_c02180 at 199.266 kb on + strand, within PGA1_c02180 at 199.299 kb on + strand, within PGA1_c02180
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 196,977 + +0.9 197,335 + +1.4 197,368 + +0.5 197,370 - +1.1 197,376 - +0.3 197,412 - -0.2 197,470 - -0.4 197,486 + +0.9 197,486 + +0.1 197,486 + +0.5 197,501 + +1.0 197,507 + +2.2 197,509 - +1.2 197,515 - -0.2 197,621 + PGA1_c02170 0.11 +1.0 197,621 + PGA1_c02170 0.11 +1.1 197,629 - PGA1_c02170 0.12 -0.1 197,629 - PGA1_c02170 0.12 +1.6 197,629 - PGA1_c02170 0.12 +0.9 197,681 + PGA1_c02170 0.18 +0.6 197,687 + PGA1_c02170 0.19 +1.2 197,771 + PGA1_c02170 0.30 +1.4 197,785 + PGA1_c02170 0.31 +0.1 197,785 + PGA1_c02170 0.31 -1.0 197,790 + PGA1_c02170 0.32 +0.3 197,790 + PGA1_c02170 0.32 +0.3 197,790 + PGA1_c02170 0.32 +1.5 197,790 + PGA1_c02170 0.32 +0.3 197,790 + PGA1_c02170 0.32 +0.3 197,792 + PGA1_c02170 0.32 +1.0 197,793 - PGA1_c02170 0.32 +0.2 197,867 - PGA1_c02170 0.42 +0.2 197,867 - PGA1_c02170 0.42 +1.1 197,942 + PGA1_c02170 0.51 +1.5 198,056 - PGA1_c02170 0.65 +1.8 198,096 + PGA1_c02170 0.70 -0.1 198,096 + PGA1_c02170 0.70 +0.5 198,104 - PGA1_c02170 0.71 +0.5 198,109 - PGA1_c02170 0.72 -0.8 198,109 - PGA1_c02170 0.72 +0.6 198,128 - PGA1_c02170 0.74 +0.1 198,168 - PGA1_c02170 0.79 +0.1 198,193 + PGA1_c02170 0.82 +0.9 198,201 - PGA1_c02170 0.83 +0.0 198,204 + PGA1_c02170 0.83 +0.6 198,220 - PGA1_c02170 0.85 +0.2 198,437 + +0.7 198,444 + +0.3 198,445 - +0.8 198,447 + -0.0 198,520 + PGA1_c02180 0.13 +1.3 198,525 + PGA1_c02180 0.13 +0.6 198,525 + PGA1_c02180 0.13 +0.2 198,525 + PGA1_c02180 0.13 +0.5 198,533 - PGA1_c02180 0.14 +0.7 198,538 - PGA1_c02180 0.14 +0.7 198,544 - PGA1_c02180 0.14 +0.0 198,558 + PGA1_c02180 0.15 +1.4 198,583 - PGA1_c02180 0.17 +0.8 198,601 - PGA1_c02180 0.18 -0.1 198,619 + PGA1_c02180 0.20 +1.5 198,635 - PGA1_c02180 0.21 +0.5 198,638 - PGA1_c02180 0.21 +2.0 198,663 - PGA1_c02180 0.23 +1.3 198,679 + PGA1_c02180 0.24 +0.6 198,725 + PGA1_c02180 0.27 -1.3 198,725 + PGA1_c02180 0.27 -0.2 198,817 + PGA1_c02180 0.34 +0.2 198,834 - PGA1_c02180 0.35 +1.0 198,834 - PGA1_c02180 0.35 +0.4 198,908 - PGA1_c02180 0.40 +1.0 198,909 - PGA1_c02180 0.40 +1.6 198,916 + PGA1_c02180 0.41 -0.7 198,953 + PGA1_c02180 0.43 -0.2 198,953 + PGA1_c02180 0.43 +0.4 199,034 + PGA1_c02180 0.49 +0.8 199,034 + PGA1_c02180 0.49 +1.1 199,042 - PGA1_c02180 0.49 +0.9 199,058 + PGA1_c02180 0.51 +1.0 199,108 + PGA1_c02180 0.54 +0.9 199,123 - PGA1_c02180 0.55 -0.3 199,158 - PGA1_c02180 0.58 +1.2 199,191 + PGA1_c02180 0.60 +0.5 199,192 + PGA1_c02180 0.60 +1.4 199,199 - PGA1_c02180 0.60 -1.3 199,240 - PGA1_c02180 0.63 +0.6 199,266 + PGA1_c02180 0.65 +1.2 199,299 + PGA1_c02180 0.68 +1.5
Or see this region's nucleotide sequence