Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1705

Experiment: Glucose defined 30C timecourse1 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1704 and Psest_1705 are separated by 330 nucleotidesPsest_1705 and Psest_1706 are separated by 0 nucleotides Psest_1704: Psest_1704 - Dehydrogenases (flavoproteins), at 1,809,595 to 1,811,250 _1704 Psest_1705: Psest_1705 - Electron transfer flavoprotein, beta subunit, at 1,811,581 to 1,812,330 _1705 Psest_1706: Psest_1706 - Electron transfer flavoprotein, alpha subunit, at 1,812,331 to 1,813,260 _1706 Position (kb) 1811 1812 1813Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1810.733 kb on + strand, within Psest_1704at 1810.733 kb on + strand, within Psest_1704at 1810.913 kb on + strand, within Psest_1704at 1810.991 kb on + strand, within Psest_1704at 1810.992 kb on - strand, within Psest_1704at 1811.092 kb on + strandat 1811.107 kb on + strandat 1811.135 kb on - strandat 1811.135 kb on - strandat 1811.237 kb on + strandat 1811.238 kb on - strandat 1811.238 kb on - strandat 1811.281 kb on + strandat 1811.281 kb on + strandat 1811.281 kb on + strandat 1811.281 kb on + strandat 1811.281 kb on + strandat 1811.281 kb on + strandat 1811.281 kb on + strandat 1811.282 kb on - strandat 1811.282 kb on - strandat 1811.282 kb on - strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.283 kb on + strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.284 kb on - strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.285 kb on + strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.286 kb on - strandat 1811.335 kb on + strandat 1811.335 kb on + strandat 1811.335 kb on + strandat 1811.335 kb on + strandat 1811.335 kb on + strandat 1811.335 kb on + strandat 1811.335 kb on + strandat 1811.335 kb on + strandat 1811.335 kb on + strandat 1811.336 kb on - strandat 1811.336 kb on - strandat 1811.336 kb on - strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.337 kb on + strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.338 kb on - strandat 1811.339 kb on + strandat 1811.340 kb on - strandat 1811.340 kb on - strandat 1811.340 kb on - strandat 1811.340 kb on - strandat 1811.340 kb on - strandat 1811.340 kb on - strandat 1811.341 kb on + strandat 1811.342 kb on - strandat 1811.342 kb on - strandat 1811.342 kb on - strandat 1811.342 kb on - strandat 1811.363 kb on - strandat 1811.396 kb on + strandat 1811.397 kb on - strandat 1811.397 kb on - strandat 1811.397 kb on - strandat 1811.420 kb on - strandat 1811.431 kb on + strandat 1811.431 kb on + strandat 1811.431 kb on + strandat 1811.431 kb on + strandat 1811.432 kb on - strandat 1811.432 kb on - strandat 1811.432 kb on - strandat 1811.432 kb on - strandat 1811.554 kb on + strandat 1811.554 kb on + strandat 1811.554 kb on + strandat 1812.328 kb on + strandat 1812.328 kb on + strandat 1812.329 kb on - strandat 1812.432 kb on - strand, within Psest_1706at 1812.732 kb on + strand, within Psest_1706at 1813.294 kb on + strandat 1813.294 kb on + strandat 1813.294 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose defined 30C timecourse1 timepoint 2
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1,810,733 + Psest_1704 0.69 -1.7
1,810,733 + Psest_1704 0.69 -2.8
1,810,913 + Psest_1704 0.80 -2.9
1,810,991 + Psest_1704 0.84 -2.5
1,810,992 - Psest_1704 0.84 -2.1
1,811,092 + -2.3
1,811,107 + -1.7
1,811,135 - -3.9
1,811,135 - -0.1
1,811,237 + -1.7
1,811,238 - -2.3
1,811,238 - -2.3
1,811,281 + -0.6
1,811,281 + -1.9
1,811,281 + -1.9
1,811,281 + -1.7
1,811,281 + -0.7
1,811,281 + -1.0
1,811,281 + -1.5
1,811,282 - -0.2
1,811,282 - -0.1
1,811,282 - -0.6
1,811,283 + +0.6
1,811,283 + -0.7
1,811,283 + +0.6
1,811,283 + -0.5
1,811,283 + -2.3
1,811,283 + -0.9
1,811,283 + -1.7
1,811,283 + -1.2
1,811,283 + -1.3
1,811,283 + -2.0
1,811,283 + -1.2
1,811,283 + -0.9
1,811,283 + -0.1
1,811,283 + -1.4
1,811,283 + -0.3
1,811,283 + +0.1
1,811,283 + -0.2
1,811,283 + -0.6
1,811,283 + -0.7
1,811,284 - -1.1
1,811,284 - +0.4
1,811,284 - -0.5
1,811,284 - -0.4
1,811,284 - +0.1
1,811,284 - -0.6
1,811,284 - -0.2
1,811,284 - -0.2
1,811,284 - -0.5
1,811,284 - +1.2
1,811,284 - -0.4
1,811,284 - +1.1
1,811,284 - +0.0
1,811,284 - -0.0
1,811,285 + -0.8
1,811,285 + +0.0
1,811,285 + -0.7
1,811,285 + +0.4
1,811,285 + -0.9
1,811,285 + -0.9
1,811,285 + -0.6
1,811,285 + +0.0
1,811,285 + -1.3
1,811,285 + -0.9
1,811,285 + -1.0
1,811,285 + -0.1
1,811,285 + -0.9
1,811,285 + -1.3
1,811,285 + -0.5
1,811,285 + -0.9
1,811,285 + -1.0
1,811,286 - +0.6
1,811,286 - +0.1
1,811,286 - +0.1
1,811,286 - -0.5
1,811,286 - -0.0
1,811,286 - +0.9
1,811,286 - +0.5
1,811,286 - -0.0
1,811,286 - +0.6
1,811,286 - +0.1
1,811,286 - -1.5
1,811,286 - -0.3
1,811,286 - -0.3
1,811,286 - +0.0
1,811,286 - +0.3
1,811,286 - -0.1
1,811,286 - -0.6
1,811,335 + +0.0
1,811,335 + -0.3
1,811,335 + +0.0
1,811,335 + +0.4
1,811,335 + -1.1
1,811,335 + -0.1
1,811,335 + -0.6
1,811,335 + -0.5
1,811,335 + -0.3
1,811,336 - -0.7
1,811,336 - -0.2
1,811,336 - -0.4
1,811,337 + -0.2
1,811,337 + -0.2
1,811,337 + -0.9
1,811,337 + +0.2
1,811,337 + -0.2
1,811,337 + -0.4
1,811,337 + -0.4
1,811,337 + -0.3
1,811,337 + -0.1
1,811,337 + +0.2
1,811,337 + -0.9
1,811,337 + -0.1
1,811,337 + +0.6
1,811,337 + -0.3
1,811,338 - -0.8
1,811,338 - +0.2
1,811,338 - +0.5
1,811,338 - +0.9
1,811,338 - -0.5
1,811,338 - -0.1
1,811,338 - -0.6
1,811,338 - -0.2
1,811,338 - -0.0
1,811,338 - -1.1
1,811,338 - +0.0
1,811,338 - +0.3
1,811,338 - -0.5
1,811,339 + +0.1
1,811,340 - -0.8
1,811,340 - -0.0
1,811,340 - -0.4
1,811,340 - -0.0
1,811,340 - +0.6
1,811,340 - -0.6
1,811,341 + -0.2
1,811,342 - +0.2
1,811,342 - -1.3
1,811,342 - -1.1
1,811,342 - +0.0
1,811,363 - -0.1
1,811,396 + -0.8
1,811,397 - +0.2
1,811,397 - -0.6
1,811,397 - -0.7
1,811,420 - -0.9
1,811,431 + -0.9
1,811,431 + -0.2
1,811,431 + +0.2
1,811,431 + +0.4
1,811,432 - -0.5
1,811,432 - -0.9
1,811,432 - -0.5
1,811,432 - +0.0
1,811,554 + +0.0
1,811,554 + -0.6
1,811,554 + -0.0
1,812,328 + -2.8
1,812,328 + -2.6
1,812,329 - -0.5
1,812,432 - Psest_1706 0.11 -2.1
1,812,732 + Psest_1706 0.43 -1.7
1,813,294 + +0.6
1,813,294 + -0.7
1,813,294 + -0.4

Or see this region's nucleotide sequence