Strain Fitness in Marinobacter adhaerens HP15 around HP15_1158

Experiment: m.b. Cobalt chloride 0.32 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1156 and HP15_1157 are separated by 43 nucleotidesHP15_1157 and HP15_1158 are separated by 157 nucleotidesHP15_1158 and HP15_1159 are separated by 73 nucleotides HP15_1156: HP15_1156 - conserved hypothetical protein, at 1,190,035 to 1,190,409 _1156 HP15_1157: HP15_1157 - cold-shock DNA-binding domain protein, at 1,190,453 to 1,191,052 _1157 HP15_1158: HP15_1158 - SlyX protein, at 1,191,210 to 1,191,428 _1158 HP15_1159: HP15_1159 - succinyl-diaminopimelate desuccinylase, at 1,191,502 to 1,192,638 _1159 Position (kb) 1191 1192Strain fitness (log2 ratio) -1 0 1 2at 1190.271 kb on - strand, within HP15_1156at 1190.271 kb on - strand, within HP15_1156at 1190.318 kb on + strand, within HP15_1156at 1190.376 kb on + strandat 1190.530 kb on - strand, within HP15_1157at 1190.578 kb on - strand, within HP15_1157at 1190.745 kb on - strand, within HP15_1157at 1190.815 kb on + strand, within HP15_1157at 1190.815 kb on + strand, within HP15_1157at 1190.822 kb on + strand, within HP15_1157at 1190.869 kb on + strand, within HP15_1157at 1190.932 kb on - strand, within HP15_1157at 1191.124 kb on - strandat 1191.144 kb on - strandat 1191.187 kb on + strandat 1191.195 kb on - strandat 1191.288 kb on - strand, within HP15_1158at 1191.396 kb on + strand, within HP15_1158at 1191.409 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM
remove
1,190,271 - HP15_1156 0.63 +1.4
1,190,271 - HP15_1156 0.63 -0.6
1,190,318 + HP15_1156 0.75 -0.1
1,190,376 + +0.1
1,190,530 - HP15_1157 0.13 -0.3
1,190,578 - HP15_1157 0.21 +1.5
1,190,745 - HP15_1157 0.49 +0.5
1,190,815 + HP15_1157 0.60 +0.6
1,190,815 + HP15_1157 0.60 +0.3
1,190,822 + HP15_1157 0.61 +2.3
1,190,869 + HP15_1157 0.69 +0.0
1,190,932 - HP15_1157 0.80 +1.2
1,191,124 - -0.9
1,191,144 - +0.0
1,191,187 + -0.4
1,191,195 - +0.0
1,191,288 - HP15_1158 0.36 -0.9
1,191,396 + HP15_1158 0.85 -0.7
1,191,409 - -0.6

Or see this region's nucleotide sequence