Strain Fitness in Shewanella oneidensis MR-1 around SO_A0045

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
32,646	+		SOA0044	0.13	-2.5
32,664	-		SOA0044	0.15	+0.6
32,665	-		SOA0044	0.15	+0.2
32,697	-		SOA0044	0.18	-1.8
32,713	-		SOA0044	0.19	-0.3
32,728	-		SOA0044	0.21	-0.2
32,737	+		SOA0044	0.21	-0.0
32,737	+		SOA0044	0.21	-0.1
32,740	+		SOA0044	0.22	-1.7
32,745	-		SOA0044	0.22	-2.9
32,745	-		SOA0044	0.22	+0.9
32,757	+		SOA0044	0.23	-0.8
32,765	-		SOA0044	0.24	+0.6
32,767	+		SOA0044	0.24	+1.8
32,767	+		SOA0044	0.24	+1.9
32,767	+		SOA0044	0.24	+0.2
32,767	+		SOA0044	0.24	-0.7
32,767	+		SOA0044	0.24	-2.2
32,767	+		SOA0044	0.24	-1.2
32,767	+		SOA0044	0.24	+0.4
32,767	+		SOA0044	0.24	-1.0
32,767	+		SOA0044	0.24	+0.4
32,767	+		SOA0044	0.24	-0.4
32,767	+		SOA0044	0.24	+0.0
32,767	+		SOA0044	0.24	-0.0
32,767	+		SOA0044	0.24	-1.0
32,767	+		SOA0044	0.24	-0.0
32,767	+		SOA0044	0.24	+0.4
32,767	+		SOA0044	0.24	-1.4
32,767	+		SOA0044	0.24	-1.1
32,767	+		SOA0044	0.24	-1.0
32,775	-		SOA0044	0.25	-1.4
32,775	-		SOA0044	0.25	+0.4
32,775	-		SOA0044	0.25	-0.6
32,775	-		SOA0044	0.25	-1.0
32,775	-		SOA0044	0.25	-0.4
32,775	-		SOA0044	0.25	+0.3
32,775	-		SOA0044	0.25	-2.7
32,775	-		SOA0044	0.25	-1.2
32,775	-		SOA0044	0.25	-1.1
32,872	+		SOA0044	0.33	-1.3
32,872	+		SOA0044	0.33	+0.1
32,877	+		SOA0044	0.34	+0.3
32,880	-		SOA0044	0.34	+0.8
32,885	-		SOA0044	0.34	+1.5
32,885	-		SOA0044	0.34	-0.0
32,885	-		SOA0044	0.34	-0.8
32,910	+		SOA0044	0.37	+1.0
32,918	-		SOA0044	0.37	-0.6
32,918	-		SOA0044	0.37	-0.6
32,924	+		SOA0044	0.38	-0.5
32,929	+		SOA0044	0.38	+1.1
32,954	+		SOA0044	0.40	-0.1
32,955	+		SOA0044	0.41	+0.7
33,012	+		SOA0044	0.46	-2.2
33,017	+		SOA0044	0.46	+0.7
33,025	-		SOA0044	0.47	-1.3
33,035	-		SOA0044	0.48	+0.3
33,046	-		SOA0044	0.49	+0.0
33,049	+		SOA0044	0.49	+0.7
33,057	-		SOA0044	0.50	-1.5
33,059	+		SOA0044	0.50	-0.0
33,059	+		SOA0044	0.50	-0.1
33,059	+		SOA0044	0.50	+0.7
33,064	+		SOA0044	0.50	+0.3
33,064	+		SOA0044	0.50	+0.2
33,067	-		SOA0044	0.50	-1.6
33,067	-		SOA0044	0.50	+1.0
33,067	-		SOA0044	0.50	-2.0
33,110	+		SOA0044	0.54	+0.7
33,128	-		SOA0044	0.56	+0.9
33,128	-		SOA0044	0.56	-1.1
33,162	+		SOA0044	0.59	-0.2
33,170	-		SOA0044	0.60	+1.4
33,170	-		SOA0044	0.60	+1.3
33,219	-		SOA0044	0.64	+0.3
33,265	-		SOA0044	0.68	+1.6
33,358	+		SOA0044	0.76	+0.6
33,450	+		SOA0044	0.84	-2.3
33,450	+		SOA0044	0.84	+0.2
33,453	-		SOA0044	0.85	-0.4
33,458	-		SOA0044	0.85	+1.3
33,464	-		SOA0044	0.86	-2.5
33,530	-				-1.1
33,537	+				+1.8
33,545	-				-0.3
33,547	+				-0.8
33,547	+				+0.3
33,655	-				+0.7
33,658	+				-0.2
33,666	-				-0.6
33,679	+				-0.0
33,679	+				-0.5
33,687	-				+1.4
33,687	-				-3.2
33,688	-				-1.6
33,689	+				-0.6
33,689	+				+1.0
33,689	+				+0.7
33,689	+				-0.5
33,697	-				-1.2
33,697	-				-0.0
33,697	-				-1.6
33,705	+				+1.3
33,705	+				-0.7
33,705	+				+0.3
33,705	+				-1.9
33,713	-				-2.0
33,713	-				+1.1
33,713	-				-0.9
33,724	+				+1.4
33,730	-				-1.4
33,786	+		SO_A0045	0.12	+0.7
33,827	+		SO_A0045	0.15	-1.4
33,850	+		SO_A0045	0.17	-0.5
33,850	+		SO_A0045	0.17	+1.4
33,850	+		SO_A0045	0.17	+0.4
33,853	-		SO_A0045	0.17	-1.3
33,858	-		SO_A0045	0.17	+0.7
33,858	-		SO_A0045	0.17	+1.8
33,858	-		SO_A0045	0.17	-0.1
33,858	-		SO_A0045	0.17	+0.7
33,874	+		SO_A0045	0.18	-0.2
33,891	+		SO_A0045	0.20	+0.6
33,903	+		SO_A0045	0.20	+1.7
33,903	+		SO_A0045	0.20	-0.5
33,935	-		SO_A0045	0.23	+0.3
33,960	-		SO_A0045	0.25	-2.5
33,961	-		SO_A0045	0.25	-0.3
33,977	+		SO_A0045	0.26	-0.9
33,977	+		SO_A0045	0.26	-1.5
33,985	-		SO_A0045	0.26	+1.5
33,985	-		SO_A0045	0.26	-0.3
33,985	-		SO_A0045	0.26	-1.5
33,985	-		SO_A0045	0.26	-0.2
33,985	-		SO_A0045	0.26	-0.1
33,986	+		SO_A0045	0.26	-1.0
33,994	-		SO_A0045	0.27	-1.0
34,042	+		SO_A0045	0.31	+0.3
34,042	+		SO_A0045	0.31	-2.4
34,050	-		SO_A0045	0.31	-0.0
34,062	+		SO_A0045	0.32	-2.5
34,070	-		SO_A0045	0.33	-1.3
34,070	-		SO_A0045	0.33	+1.0
34,072	+		SO_A0045	0.33	-0.8
34,080	-		SO_A0045	0.33	-1.0
34,095	-		SO_A0045	0.34	-0.5
34,100	+		SO_A0045	0.35	-0.3
34,102	+		SO_A0045	0.35	+1.0
34,102	+		SO_A0045	0.35	+0.5
34,102	+		SO_A0045	0.35	-0.6
34,108	+		SO_A0045	0.35	-0.3
34,108	+		SO_A0045	0.35	-2.1
34,108	+		SO_A0045	0.35	-0.9
34,110	-		SO_A0045	0.36	-0.0
34,116	-		SO_A0045	0.36	-2.5
34,116	-		SO_A0045	0.36	-0.5
34,116	-		SO_A0045	0.36	-0.4
34,116	-		SO_A0045	0.36	+1.5
34,139	+		SO_A0045	0.38	-0.8
34,147	-		SO_A0045	0.38	+0.1
34,154	-		SO_A0045	0.39	+1.2
34,213	+		SO_A0045	0.43	-0.9
34,213	+		SO_A0045	0.43	-1.8
34,245	-		SO_A0045	0.45	-2.2
34,245	-		SO_A0045	0.45	-0.0
34,286	+		SO_A0045	0.48	+0.2
34,289	-		SO_A0045	0.49	+0.2
34,293	+		SO_A0045	0.49	-3.4
34,374	+		SO_A0045	0.55	-1.2
34,462	+		SO_A0045	0.61	+1.4
34,462	+		SO_A0045	0.61	+0.4
34,462	+		SO_A0045	0.61	-0.2
34,462	+		SO_A0045	0.61	-2.1
34,462	+		SO_A0045	0.61	+0.6
34,462	+		SO_A0045	0.61	-0.1
34,468	+		SO_A0045	0.62	-1.6
34,468	+		SO_A0045	0.62	-1.0
34,468	+		SO_A0045	0.62	-0.8
34,470	-		SO_A0045	0.62	+1.6
34,473	+		SO_A0045	0.62	+0.5
34,476	-		SO_A0045	0.62	+1.0
34,476	-		SO_A0045	0.62	+3.2
34,501	-		SO_A0045	0.64	+0.1
34,502	+		SO_A0045	0.64	-0.6
34,512	+		SO_A0045	0.65	-2.2
34,530	+		SO_A0045	0.66	+0.2
34,530	+		SO_A0045	0.66	-1.0
34,530	+		SO_A0045	0.66	+0.7
34,530	+		SO_A0045	0.66	+1.0
34,538	-		SO_A0045	0.67	-1.9
34,538	-		SO_A0045	0.67	+2.2
34,583	+		SO_A0045	0.70	-0.3
34,607	+		SO_A0045	0.72	+0.4
34,701	+		SO_A0045	0.79	+0.8
34,701	+		SO_A0045	0.79	-0.6
34,706	+		SO_A0045	0.79	-0.3
34,706	+		SO_A0045	0.79	-2.1
34,709	-		SO_A0045	0.79	+1.1
34,713	+		SO_A0045	0.80	+1.4
34,713	+		SO_A0045	0.80	-3.6
34,713	+		SO_A0045	0.80	-1.4
34,713	+		SO_A0045	0.80	-1.1
34,714	-		SO_A0045	0.80	-0.3
34,721	-		SO_A0045	0.80	-0.6
34,721	-		SO_A0045	0.80	+0.6
34,723	+		SO_A0045	0.80	-0.4
34,733	+		SO_A0045	0.81	+0.6
34,764	-		SO_A0045	0.83	-1.8
34,764	-		SO_A0045	0.83	+0.1
34,765	+		SO_A0045	0.83	+0.7
34,771	+		SO_A0045	0.84	+0.9
34,772	-		SO_A0045	0.84	-1.9
34,773	-		SO_A0045	0.84	+1.6
34,774	-		SO_A0045	0.84	+0.5
34,788	-		SO_A0045	0.85	-0.1
34,798	-		SO_A0045	0.86	-0.3
34,858	+				+0.4
34,864	+				+2.7
34,864	+				-0.3
34,864	+				-1.3
34,864	+				+2.6
34,872	-				+0.1
34,872	-				+0.4
34,872	-				-0.4
34,872	-				-2.1
34,872	-				+1.1
34,899	-				+0.9
34,899	-				+1.3
34,899	-				+1.4
34,899	-				+1.0
34,928	+				-1.0
34,928	+				+0.3
34,951	-				-0.4
34,951	-				+0.1
34,958	-				-1.0
35,020	-				-1.2
35,029	+				+0.1
35,029	+				+0.7
35,029	+				+0.9
35,031	-				+0.8
35,039	-				-1.5
35,048	+				-1.3
35,070	-				+0.9
35,076	-				-3.0
35,078	+				-1.5
35,082	+				-2.9
35,090	-				+1.2
35,095	+				+2.3
35,103	-				-2.3
35,112	+				+1.7
35,112	+				-0.1
35,112	+				+1.0
35,120	-				-1.8
35,120	-				-1.2
35,138	+				-3.0
35,141	-				+1.6
35,143	+				-0.2
35,143	+				+0.7
35,143	+				-0.4
35,151	-		SOA0046	0.16	-0.1
35,151	-		SOA0046	0.16	-0.1
35,151	-		SOA0046	0.16	-0.7
35,151	-		SOA0046	0.16	-0.5
35,152	+		SOA0046	0.17	+0.2
35,159	+		SOA0046	0.24	+0.0
35,162	+		SOA0046	0.26	+0.6
35,169	+		SOA0046	0.33	+0.8
35,170	+		SOA0046	0.34	-0.1
35,170	+		SOA0046	0.34	-0.2
35,176	+		SOA0046	0.40	+0.6
35,176	+		SOA0046	0.40	+0.2
35,177	+		SOA0046	0.41	-0.7
35,177	+		SOA0046	0.41	-2.8
35,177	+		SOA0046	0.41	+0.4
35,177	+		SOA0046	0.41	-0.7
35,177	+		SOA0046	0.41	+0.3
35,177	+		SOA0046	0.41	-0.6
35,177	-		SOA0046	0.41	-1.6
35,178	-		SOA0046	0.42	+1.5
35,178	-		SOA0046	0.42	-0.0
35,178	-		SOA0046	0.42	-0.9
35,184	-		SOA0046	0.48	-0.3
35,184	-		SOA0046	0.48	-1.9
35,184	-		SOA0046	0.48	+0.2
35,185	-		SOA0046	0.49	-0.4
35,205	+		SOA0046	0.69	-1.3
35,233	-				+0.2
35,238	+				+1.6
35,248	+				-0.1
35,248	+				-0.5
35,248	+				+1.5
35,248	+				-1.2
35,256	-				+0.4
35,256	-				-0.5
35,258	+				+1.1
35,258	+				+2.7
35,258	+				-1.0
35,258	+				-2.3
35,261	-				+0.1
35,263	+				-1.8
35,263	+				-1.9
35,263	+				+0.3
35,263	+				-2.5
35,263	+				+0.2
35,266	-				-1.7
35,266	-				+0.5
35,266	-				+1.4
35,266	-				-0.0
35,266	-				+1.1
35,266	-				+0.5
35,266	-				-1.8
35,266	-				+1.8
35,271	-				-0.2
35,271	-				+0.6
35,271	-				+2.4
35,271	-				+0.4
35,271	-				+1.5
35,279	+				-1.1
35,279	+				-0.4
35,295	+				-2.5
35,303	-				+1.7
35,308	+				+0.1
35,309	+				-1.9
35,309	+				-1.7
35,357	-				-2.5
35,357	-				-0.1
35,357	-				+3.6
35,357	-				-0.2
35,357	-				+0.5
35,357	-				-0.4
35,359	-				+1.0
35,396	+				+1.1
35,396	+				-2.4
35,404	-				-1.6
35,404	-				+0.6
35,404	-				+1.7
35,404	-				-0.7
35,434	+				-1.3
35,442	-				-0.1
35,474	+		SO_A0047	0.13	-0.8
35,478	-		SO_A0047	0.14	-0.8
35,481	+		SO_A0047	0.15	+1.2
35,497	-		SO_A0047	0.20	+0.5
35,497	-		SO_A0047	0.20	-1.2
35,497	-		SO_A0047	0.20	+0.3
35,497	-		SO_A0047	0.20	-0.5
35,503	-		SO_A0047	0.22	+0.5
35,504	+		SO_A0047	0.22	-0.2
35,517	+		SO_A0047	0.26	-0.3
35,517	+		SO_A0047	0.26	+0.4
35,530	-		SO_A0047	0.30	-0.6
35,532	+		SO_A0047	0.31	-2.5
35,532	+		SO_A0047	0.31	+0.2
35,532	+		SO_A0047	0.31	-3.2
35,532	+		SO_A0047	0.31	+2.7
35,540	-		SO_A0047	0.33	+1.4
35,540	-		SO_A0047	0.33	-1.0
35,540	-		SO_A0047	0.33	+2.1
35,540	-		SO_A0047	0.33	+0.9
35,540	-		SO_A0047	0.33	-1.2
35,540	-		SO_A0047	0.33	+2.2
35,544	+		SO_A0047	0.34	+1.0
35,550	+		SO_A0047	0.36	-0.3
35,550	+		SO_A0047	0.36	-0.4
35,557	-		SO_A0047	0.38	-0.7
35,619	+		SO_A0047	0.57	-1.0
35,626	+		SO_A0047	0.59	+1.4
35,628	+		SO_A0047	0.59	-1.7
35,634	-		SO_A0047	0.61	-0.5
35,636	-		SO_A0047	0.62	-0.6
35,648	-		SO_A0047	0.65	-0.2
35,655	+		SO_A0047	0.68	-0.5
35,665	-		SO_A0047	0.71	-1.3
35,665	-		SO_A0047	0.71	+0.8
35,685	+		SO_A0047	0.77	-1.0
35,693	-		SO_A0047	0.79	+0.4
35,693	-		SO_A0047	0.79	+1.0
35,693	-		SO_A0047	0.79	+0.3
35,707	-		SO_A0047	0.83	+1.6
35,714	+		SO_A0047	0.85	+0.3
35,715	+		SO_A0047	0.86	-1.0
35,715	+		SO_A0047	0.86	+1.2
35,722	-		SO_A0047	0.88	-0.9
35,722	-		SO_A0047	0.88	+0.3
35,723	-		SO_A0047	0.88	-1.3
35,723	-		SO_A0047	0.88	-1.5
35,723	-		SO_A0047	0.88	+0.8
35,755	-				+0.4
35,784	+				-1.8
35,784	+				-0.2
35,784	+				-0.8
35,784	+				-0.4
35,792	-				+0.0
35,792	-				+2.4
35,792	-				+0.4
35,792	-				-0.8
35,792	-				+0.4
35,793	+				-0.3
35,800	+				-1.0
35,802	-				-0.2
35,802	-				+0.1
35,803	-				+0.8
35,808	-				+0.4
35,808	-				-3.1
35,808	-				-0.3
35,812	-				-0.1
35,838	-				+1.0
35,840	+				-0.1
35,845	+				+0.1
35,845	+				-0.0
35,845	+				+0.7
35,845	+				+1.6
35,845	+				-2.4
35,848	-				-0.6
35,853	-				-0.3
35,853	-				-1.3
35,853	-				-2.4
35,853	-				-1.7
35,853	-				+0.4
35,853	-				-2.5
35,853	-				+0.7
35,853	-				+2.2
35,853	-				-0.8
35,853	-				+1.9
35,853	-				-1.6
35,853	-				-1.3
35,853	-				+1.8
35,853	-				+0.2
35,873	+				+0.9
35,885	-				+0.4
35,887	+				-2.0
35,887	+				-1.5
35,887	+				-0.8
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35,887	+				+0.1
35,887	+				-0.8
35,887	+				+2.2
35,887	+				-0.9
35,887	+				-1.0
35,887	+				-0.6
35,890	-				+1.7
35,890	-				+0.6
35,890	-				+0.9
35,892	+				-0.1
35,892	+				-2.3
35,892	+				-2.7
35,892	+				+2.0
35,892	+				+0.8
35,892	+				+3.4
35,892	+				-2.0
35,892	+				+1.8
35,895	-				+4.3
35,895	-				-0.3
35,895	-				-0.1
35,895	-				+1.1
35,895	-				-0.1
35,895	-				-0.6
35,895	-				+0.5
35,895	-				-0.6
35,895	-				-1.4
35,895	-				+0.7
35,895	-				-0.8
35,895	-				+1.4
35,895	-				+1.8
35,895	-				-0.0
35,895	-				-1.7
35,895	-				+0.5
35,895	-				-2.4
35,895	-				-0.2
35,895	-				-0.3
35,895	-				+0.8
35,895	-				+1.2
35,897	+				-2.6
35,900	-				+1.1
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35,900	-				+0.7
35,900	-				-0.9
35,900	-				-0.5
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35,900	-				-0.4
35,900	-				-1.3
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35,905	-				-0.0
35,907	+				-0.0
35,916	-				-0.9
35,964	+				+0.7
35,972	-				+0.7
35,977	-				-1.5