Strain Fitness in Shewanella oneidensis MR-1 around SO4712

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
4,913,680	-		SO4711	0.50	+1.3
4,913,680	-		SO4711	0.50	+1.3
4,913,747	-		SO4711	0.56	-0.6
4,913,786	-		SO4711	0.59	+0.8
4,913,820	+		SO4711	0.62	-0.9
4,913,820	+		SO4711	0.62	-1.9
4,913,820	+		SO4711	0.62	+0.9
4,913,828	-		SO4711	0.63	+2.1
4,913,828	-		SO4711	0.63	-0.0
4,913,828	-		SO4711	0.63	+0.5
4,913,877	+		SO4711	0.67	-0.6
4,913,893	-		SO4711	0.68	+1.4
4,914,066	-		SO4711	0.83	-0.5
4,914,077	+		SO4711	0.84	+1.4
4,914,240	+				-1.2
4,914,262	+				+0.9
4,914,263	+				-0.0
4,914,270	-				-2.5
4,914,380	+				-2.2
4,914,380	+				-0.1
4,914,385	+				-1.9
4,914,388	-				+0.6
4,914,388	-				+1.0
4,914,534	+				-1.8
4,914,552	-				-0.5
4,914,578	-				-1.1
4,914,592	+				+1.3
4,914,600	+				+0.1
4,914,703	-				-1.6
4,914,703	-				-1.8
4,914,732	+				-1.4
4,914,737	+				+0.2
4,914,740	-				+0.3
4,914,821	+		SO4712	0.11	-0.6
4,914,821	+		SO4712	0.11	-0.5
4,914,821	+		SO4712	0.11	-0.5
4,914,821	+		SO4712	0.11	+0.3
4,914,821	+		SO4712	0.11	+0.9
4,914,821	+		SO4712	0.11	-1.4
4,914,829	-		SO4712	0.11	-0.8
4,914,829	-		SO4712	0.11	-0.3
4,914,829	-		SO4712	0.11	+0.3
4,914,829	-		SO4712	0.11	+0.2
4,914,829	-		SO4712	0.11	-1.7
4,914,829	-		SO4712	0.11	+1.5
4,914,829	-		SO4712	0.11	+0.7
4,914,829	-		SO4712	0.11	-0.9
4,914,829	-		SO4712	0.11	+0.5
4,914,892	-		SO4712	0.16	-1.2
4,914,926	+		SO4712	0.18	-1.6
4,914,926	+		SO4712	0.18	+0.6
4,914,926	+		SO4712	0.18	+4.0
4,915,024	+		SO4712	0.25	-1.0
4,915,045	+		SO4712	0.27	+3.6
4,915,077	-		SO4712	0.29	-0.3
4,915,126	+		SO4712	0.32	+0.6
4,915,126	+		SO4712	0.32	-0.3
4,915,132	+		SO4712	0.33	-2.2
4,915,132	+		SO4712	0.33	+0.2
4,915,132	+		SO4712	0.33	-0.6
4,915,166	+		SO4712	0.35	-0.4
4,915,174	-		SO4712	0.36	+1.9
4,915,174	-		SO4712	0.36	+0.8
4,915,174	-		SO4712	0.36	+1.3
4,915,200	-		SO4712	0.38	-1.5
4,915,293	-		SO4712	0.44	+0.3
4,915,293	-		SO4712	0.44	-1.1
4,915,293	-		SO4712	0.44	-2.7
4,915,312	+		SO4712	0.46	-2.8
4,915,353	-		SO4712	0.49	-0.0
4,915,380	+		SO4712	0.51	+0.3
4,915,388	-		SO4712	0.51	-1.1
4,915,394	+		SO4712	0.52	-0.6
4,915,507	-		SO4712	0.60	-1.7
4,915,541	-		SO4712	0.62	-0.6
4,915,560	+		SO4712	0.64	-1.2
4,915,599	+		SO4712	0.66	-1.4
4,915,607	-		SO4712	0.67	-2.8
4,915,703	-		SO4712	0.74	+1.3
4,915,775	-		SO4712	0.79	-1.6
4,915,864	+		SO4712	0.85	+0.9
4,915,864	+		SO4712	0.85	+0.8
4,915,864	+		SO4712	0.85	-1.6
4,915,872	-		SO4712	0.86	-2.1
4,915,872	-		SO4712	0.86	+3.7
4,915,886	+		SO4712	0.87	-1.3
4,915,963	+				+1.1
4,916,009	+				-0.2
4,916,015	+				-0.3
4,916,017	-				+1.3
4,916,031	-				+0.7
4,916,073	+				+0.5
4,916,081	-				+2.9
4,916,116	+				-0.7
4,916,116	+				+0.1
4,916,124	-				+1.8
4,916,374	-				+1.0
4,916,424	+				-1.0
4,916,535	+				+1.2
4,916,556	+				+0.7
4,916,564	-				-2.1
4,916,668	-				-1.2
4,916,703	-		SO4713	0.11	-2.4
4,916,799	+		SO4713	0.18	-1.7
4,916,799	+		SO4713	0.18	+0.1
4,916,803	+		SO4713	0.19	-1.5
4,916,871	+		SO4713	0.24	+0.6
4,916,935	-		SO4713	0.28	-1.6