Strain Fitness in Shewanella oneidensis MR-1 around SO4476

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
4,663,423	+				-0.0
4,663,426	-				+0.6
4,663,432	-				-0.4
4,663,432	-				+0.5
4,663,449	+		SO4475	0.11	+1.4
4,663,449	+		SO4475	0.11	-0.0
4,663,449	+		SO4475	0.11	-0.1
4,663,457	-		SO4475	0.12	-0.1
4,663,553	+		SO4475	0.23	+0.3
4,663,553	+		SO4475	0.23	-0.9
4,663,561	-		SO4475	0.24	+0.2
4,663,622	-		SO4475	0.31	+0.7
4,663,623	+		SO4475	0.31	+0.8
4,663,661	-		SO4475	0.35	+1.9
4,663,682	-		SO4475	0.37	-1.2
4,663,727	+		SO4475	0.42	+2.0
4,663,801	+		SO4475	0.51	+0.3
4,663,845	+		SO4475	0.56	+0.1
4,663,997	+		SO4475	0.73	-0.3
4,664,002	+		SO4475	0.73	+0.4
4,664,003	-		SO4475	0.73	-0.7
4,664,010	-		SO4475	0.74	+1.9
4,664,010	-		SO4475	0.74	+0.8
4,664,168	+				+0.5
4,664,169	+				-1.7
4,664,259	+				-2.2
4,664,259	+				+2.9
4,664,267	-				+0.0
4,664,279	-				-0.5
4,664,321	-				+0.5
4,664,327	-				-0.4
4,664,435	+		SO4476	0.29	+1.4
4,664,435	+		SO4476	0.29	-0.3
4,664,467	+		SO4476	0.36	+0.5
4,664,511	+		SO4476	0.45	+1.1
4,664,599	+		SO4476	0.63	-0.5
4,664,603	-		SO4476	0.63	+0.5
4,664,644	-		SO4476	0.72	+0.1
4,664,684	+		SO4476	0.80	+1.6
4,664,688	+		SO4476	0.81	-1.4
4,664,698	-		SO4476	0.83	+0.2
4,664,701	-		SO4476	0.83	+1.3
4,664,703	-		SO4476	0.84	+0.9
4,664,709	+		SO4476	0.85	+0.3
4,664,717	-		SO4476	0.87	+0.3
4,664,717	-				+1.1
4,664,719	+		SO4476	0.87	-2.5
4,664,764	+				+0.7
4,664,799	-				-2.4
4,664,869	+				-2.5
4,664,869	+				+2.2
4,664,877	+				+0.8
4,664,877	-				-2.6
4,664,877	-				-1.2
4,664,904	+				-0.9
4,664,904	+				+0.8
4,664,904	+				+0.0
4,664,904	+				-1.3
4,664,904	+				+0.6
4,664,912	-				-2.8
4,664,922	-				+0.0
4,664,952	+				+1.7
4,665,002	+				+1.5
4,665,045	-				+2.4
4,665,093	+				+0.3
4,665,101	-				-1.5
4,665,101	-				+0.4
4,665,112	+				-2.2
4,665,120	-				-1.1
4,665,208	-	cpxR	SO4477	0.12	+2.5
4,665,223	-	cpxR	SO4477	0.14	-0.2
4,665,288	-	cpxR	SO4477	0.24	-0.0
4,665,288	-	cpxR	SO4477	0.24	-1.2
4,665,288	-	cpxR	SO4477	0.24	-0.2
4,665,288	-	cpxR	SO4477	0.24	-0.2
4,665,288	-	cpxR	SO4477	0.24	+0.8
4,665,304	+	cpxR	SO4477	0.26	-0.9
4,665,304	+	cpxR	SO4477	0.26	-1.9
4,665,304	+	cpxR	SO4477	0.26	-2.2
4,665,312	-	cpxR	SO4477	0.27	+0.3
4,665,312	-	cpxR	SO4477	0.27	-1.5
4,665,312	-	cpxR	SO4477	0.27	-1.7
4,665,314	+	cpxR	SO4477	0.27	+1.8
4,665,416	+	cpxR	SO4477	0.42	-1.1
4,665,538	+	cpxR	SO4477	0.60	-0.5
4,665,600	+	cpxR	SO4477	0.69	-1.0
4,665,609	-	cpxR	SO4477	0.70	-0.3
4,665,611	+	cpxR	SO4477	0.71	+1.4
4,665,619	+	cpxR	SO4477	0.72	+0.2
4,665,619	+	cpxR	SO4477	0.72	+0.8
4,665,619	+	cpxR	SO4477	0.72	+0.9
4,665,619	+	cpxR	SO4477	0.72	+0.7
4,665,627	-	cpxR	SO4477	0.73	+3.1
4,665,627	-	cpxR	SO4477	0.73	-0.5
4,665,627	-	cpxR	SO4477	0.73	-0.9
4,665,627	-	cpxR	SO4477	0.73	-0.6
4,665,714	-	cpxR	SO4477	0.86	+0.8
4,665,749	+				-0.4