Strain Fitness in Shewanella oneidensis MR-1 around SO4408

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
4,600,027	+		SO4407	0.28	-1.3
4,600,027	+		SO4407	0.28	+0.4
4,600,035	-		SO4407	0.28	-0.8
4,600,169	+		SO4407	0.41	+1.7
4,600,169	+		SO4407	0.41	-1.6
4,600,169	+		SO4407	0.41	-1.1
4,600,217	+		SO4407	0.46	+1.4
4,600,328	+		SO4407	0.57	-1.4
4,600,347	-		SO4407	0.58	-2.3
4,600,370	-		SO4407	0.61	-0.3
4,600,428	-		SO4407	0.66	-1.0
4,600,428	-		SO4407	0.66	+0.8
4,600,566	-		SO4407	0.80	+1.4
4,600,582	-		SO4407	0.81	+4.9
4,600,611	-		SO4407	0.84	+0.6
4,600,732	-				-0.2
4,600,754	-				+0.8
4,600,755	+				-0.0
4,600,761	-				+0.8
4,600,984	+				+2.2
4,601,012	-				+2.5
4,601,092	-	bipA	SO4408	0.13	+1.9
4,601,108	+	bipA	SO4408	0.13	+4.9
4,601,161	+	bipA	SO4408	0.16	+1.0
4,601,169	-	bipA	SO4408	0.17	+2.4
4,601,176	+	bipA	SO4408	0.17	+2.7
4,601,184	-	bipA	SO4408	0.18	+2.7
4,601,184	-	bipA	SO4408	0.18	+3.1
4,601,247	+	bipA	SO4408	0.21	+3.2
4,601,414	-	bipA	SO4408	0.30	+1.7
4,601,446	-	bipA	SO4408	0.32	+3.2
4,601,446	-	bipA	SO4408	0.32	+2.9
4,601,513	+	bipA	SO4408	0.36	+1.0
4,601,572	+	bipA	SO4408	0.39	+3.0
4,601,572	+	bipA	SO4408	0.39	+1.6
4,601,572	+	bipA	SO4408	0.39	+1.4
4,601,590	-	bipA	SO4408	0.40	+1.3
4,601,614	+	bipA	SO4408	0.41	+3.2
4,601,644	+	bipA	SO4408	0.43	+1.2
4,601,697	+	bipA	SO4408	0.46	+3.0
4,601,733	+	bipA	SO4408	0.48	+2.1
4,601,740	+	bipA	SO4408	0.48	+2.2
4,601,799	-	bipA	SO4408	0.52	+2.2
4,601,894	+	bipA	SO4408	0.57	+2.6
4,601,901	-	bipA	SO4408	0.57	+2.2
4,601,902	-	bipA	SO4408	0.57	+2.0
4,601,902	-	bipA	SO4408	0.57	+3.0
4,601,902	-	bipA	SO4408	0.57	+2.1
4,601,909	+	bipA	SO4408	0.58	+1.4
4,601,917	-	bipA	SO4408	0.58	+2.1
4,601,917	-	bipA	SO4408	0.58	+4.1
4,601,917	-	bipA	SO4408	0.58	+0.3
4,601,917	-	bipA	SO4408	0.58	+2.4
4,601,987	-	bipA	SO4408	0.62	+2.2
4,601,987	-	bipA	SO4408	0.62	+2.9
4,602,119	-	bipA	SO4408	0.69	+0.7
4,602,127	-	bipA	SO4408	0.70	+1.8
4,602,239	+	bipA	SO4408	0.76	+2.8
4,602,284	-	bipA	SO4408	0.78	+2.5
4,602,310	+	bipA	SO4408	0.80	+3.4
4,602,310	+	bipA	SO4408	0.80	+3.1
4,602,318	-	bipA	SO4408	0.80	+2.7
4,602,318	-	bipA	SO4408	0.80	+1.0
4,602,318	-	bipA	SO4408	0.80	+1.5
4,602,375	+	bipA	SO4408	0.83	+3.1
4,602,381	+	bipA	SO4408	0.84	+1.9
4,602,402	+	bipA	SO4408	0.85	+1.8
4,602,402	+	bipA	SO4408	0.85	+1.4
4,602,402	+	bipA	SO4408	0.85	+1.5
4,602,402	+	bipA	SO4408	0.85	+1.8
4,602,402	+	bipA	SO4408	0.85	+2.4
4,602,410	-	bipA	SO4408	0.85	+2.0
4,602,410	-	bipA	SO4408	0.85	+3.9
4,602,425	-	bipA	SO4408	0.86	+4.5
4,602,445	+	bipA	SO4408	0.87	+1.8
4,602,445	+	bipA	SO4408	0.87	+0.7
4,602,445	+	bipA	SO4408	0.87	+3.4
4,602,445	+	bipA	SO4408	0.87	+2.5
4,602,445	+	bipA	SO4408	0.87	+1.4
4,602,453	-	bipA	SO4408	0.88	+1.0
4,602,453	-	bipA	SO4408	0.88	+2.1
4,602,461	-	bipA	SO4408	0.88	+2.5
4,602,651	-				+2.9
4,602,758	-				+2.4
4,602,772	+				+1.4
4,602,883	+				-3.0
4,602,989	-		SO4409	0.48	+0.9
4,603,054	+		SO4409	0.87	-2.6
4,603,061	+				+0.2
4,603,092	+				-0.5
4,603,130	-				-1.5
4,603,131	-				+2.0
4,603,227	-				+0.8
4,603,250	+				-0.4
4,603,269	-				-0.9
4,603,323	-				+0.5
4,603,339	+				-3.3
4,603,347	-				-0.2
4,603,454	-				+0.1
4,603,629	+				+2.2
4,603,637	-				+3.9