Strain Fitness in Shewanella oneidensis MR-1 around SO4381

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4380 and SO4381 are separated by 5 nucleotidesSO4381 and fabG-2 are separated by 104 nucleotidesfabG-2 and fabF-2 are separated by 0 nucleotides SO4380: SO4380 - 3-oxoacyl-(acyl-carrier-protein) synthase II, putative (NCBI ptt file), at 4,575,430 to 4,576,647 SO4380 SO4381: SO4381 - thioester dehydrase family protein (NCBI ptt file), at 4,576,653 to 4,577,195 SO4381 SO4382: fabG-2 - 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI ptt file), at 4,577,300 to 4,578,025 fabG-2 SO4383: fabF-2 - 3-oxoacyl-(acyl-carrier-protein) synthase II (NCBI ptt file), at 4,578,026 to 4,579,288 fabF-2 Position (kb) 4576 4577 4578Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4575.659 kb on - strand, within SO4380at 4575.680 kb on + strand, within SO4380at 4575.680 kb on + strand, within SO4380at 4575.727 kb on + strand, within SO4380at 4575.829 kb on + strand, within SO4380at 4575.922 kb on - strand, within SO4380at 4575.941 kb on - strand, within SO4380at 4575.950 kb on + strand, within SO4380at 4575.958 kb on - strand, within SO4380at 4575.958 kb on - strand, within SO4380at 4576.119 kb on - strand, within SO4380at 4576.119 kb on - strand, within SO4380at 4576.189 kb on + strand, within SO4380at 4576.191 kb on + strand, within SO4380at 4576.191 kb on + strand, within SO4380at 4576.191 kb on + strand, within SO4380at 4576.236 kb on + strand, within SO4380at 4576.399 kb on + strand, within SO4380at 4576.405 kb on + strand, within SO4380at 4576.414 kb on - strand, within SO4380at 4576.561 kb on - strandat 4576.648 kb on - strandat 4576.660 kb on + strandat 4576.706 kb on + strandat 4576.729 kb on - strand, within SO4381at 4576.809 kb on + strand, within SO4381at 4576.824 kb on - strand, within SO4381at 4576.847 kb on + strand, within SO4381at 4576.865 kb on - strand, within SO4381at 4576.985 kb on - strand, within SO4381at 4576.994 kb on + strand, within SO4381at 4577.024 kb on + strand, within SO4381at 4577.024 kb on + strand, within SO4381at 4577.032 kb on - strand, within SO4381at 4577.032 kb on - strand, within SO4381at 4577.046 kb on - strand, within SO4381at 4577.047 kb on + strand, within SO4381at 4577.056 kb on - strand, within SO4381at 4577.075 kb on + strand, within SO4381at 4577.152 kb on - strandat 4577.176 kb on + strandat 4577.176 kb on + strandat 4577.181 kb on + strandat 4577.184 kb on - strandat 4577.184 kb on - strandat 4577.197 kb on - strandat 4577.197 kb on - strandat 4577.202 kb on + strandat 4577.202 kb on + strandat 4577.210 kb on - strandat 4577.210 kb on - strandat 4577.324 kb on + strandat 4577.355 kb on + strandat 4577.355 kb on + strandat 4577.355 kb on + strandat 4577.363 kb on - strandat 4577.363 kb on - strandat 4577.363 kb on - strandat 4577.417 kb on + strand, within fabG-2at 4577.430 kb on + strand, within fabG-2at 4577.451 kb on + strand, within fabG-2at 4577.451 kb on + strand, within fabG-2at 4577.453 kb on - strand, within fabG-2at 4577.453 kb on - strand, within fabG-2at 4577.473 kb on - strand, within fabG-2at 4577.495 kb on + strand, within fabG-2at 4577.566 kb on + strand, within fabG-2at 4577.616 kb on + strand, within fabG-2at 4577.619 kb on - strand, within fabG-2at 4577.626 kb on + strand, within fabG-2at 4577.659 kb on + strand, within fabG-2at 4577.664 kb on + strand, within fabG-2at 4577.686 kb on + strand, within fabG-2at 4577.728 kb on - strand, within fabG-2at 4577.739 kb on + strand, within fabG-2at 4577.752 kb on + strand, within fabG-2at 4577.764 kb on + strand, within fabG-2at 4577.772 kb on - strand, within fabG-2at 4577.772 kb on - strand, within fabG-2at 4577.790 kb on + strand, within fabG-2at 4577.802 kb on + strand, within fabG-2at 4577.802 kb on + strand, within fabG-2at 4577.802 kb on + strand, within fabG-2at 4577.802 kb on + strand, within fabG-2at 4577.802 kb on + strand, within fabG-2at 4577.802 kb on + strand, within fabG-2at 4577.802 kb on + strand, within fabG-2at 4577.802 kb on + strand, within fabG-2at 4577.802 kb on + strand, within fabG-2at 4577.810 kb on - strand, within fabG-2at 4577.810 kb on - strand, within fabG-2at 4577.810 kb on - strand, within fabG-2at 4577.810 kb on - strand, within fabG-2at 4577.810 kb on - strand, within fabG-2at 4577.887 kb on + strand, within fabG-2at 4577.887 kb on + strand, within fabG-2at 4577.887 kb on + strand, within fabG-2at 4577.887 kb on + strand, within fabG-2at 4577.895 kb on - strand, within fabG-2at 4577.895 kb on - strand, within fabG-2at 4578.014 kb on + strandat 4578.101 kb on + strandat 4578.137 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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4,575,659 - SO4380 0.19 -0.0
4,575,680 + SO4380 0.21 -0.3
4,575,680 + SO4380 0.21 -0.5
4,575,727 + SO4380 0.24 -0.2
4,575,829 + SO4380 0.33 -2.3
4,575,922 - SO4380 0.40 -2.2
4,575,941 - SO4380 0.42 -0.0
4,575,950 + SO4380 0.43 -1.2
4,575,958 - SO4380 0.43 +1.6
4,575,958 - SO4380 0.43 -0.2
4,576,119 - SO4380 0.57 +0.5
4,576,119 - SO4380 0.57 -0.2
4,576,189 + SO4380 0.62 -0.8
4,576,191 + SO4380 0.62 +0.6
4,576,191 + SO4380 0.62 -1.3
4,576,191 + SO4380 0.62 -0.2
4,576,236 + SO4380 0.66 -0.7
4,576,399 + SO4380 0.80 -0.6
4,576,405 + SO4380 0.80 -0.8
4,576,414 - SO4380 0.81 -3.3
4,576,561 - +0.1
4,576,648 - -2.9
4,576,660 + +1.5
4,576,706 + -0.4
4,576,729 - SO4381 0.14 +0.0
4,576,809 + SO4381 0.29 -0.4
4,576,824 - SO4381 0.31 +0.7
4,576,847 + SO4381 0.36 -2.0
4,576,865 - SO4381 0.39 -0.0
4,576,985 - SO4381 0.61 -1.2
4,576,994 + SO4381 0.63 -1.1
4,577,024 + SO4381 0.68 -0.2
4,577,024 + SO4381 0.68 +0.3
4,577,032 - SO4381 0.70 -1.1
4,577,032 - SO4381 0.70 -1.0
4,577,046 - SO4381 0.72 +0.3
4,577,047 + SO4381 0.73 -1.9
4,577,056 - SO4381 0.74 -2.3
4,577,075 + SO4381 0.78 +0.0
4,577,152 - -0.6
4,577,176 + +0.9
4,577,176 + -0.2
4,577,181 + -1.3
4,577,184 - +1.4
4,577,184 - +0.1
4,577,197 - +0.7
4,577,197 - -2.0
4,577,202 + -2.0
4,577,202 + +0.4
4,577,210 - -1.3
4,577,210 - -1.5
4,577,324 + -1.6
4,577,355 + -0.9
4,577,355 + -2.4
4,577,355 + -0.5
4,577,363 - -0.6
4,577,363 - +0.4
4,577,363 - -1.2
4,577,417 + fabG-2 SO4382 0.16 -1.5
4,577,430 + fabG-2 SO4382 0.18 -2.3
4,577,451 + fabG-2 SO4382 0.21 -1.4
4,577,451 + fabG-2 SO4382 0.21 -1.2
4,577,453 - fabG-2 SO4382 0.21 -1.8
4,577,453 - fabG-2 SO4382 0.21 -3.3
4,577,473 - fabG-2 SO4382 0.24 -0.2
4,577,495 + fabG-2 SO4382 0.27 +0.1
4,577,566 + fabG-2 SO4382 0.37 +2.5
4,577,616 + fabG-2 SO4382 0.44 +0.2
4,577,619 - fabG-2 SO4382 0.44 +1.0
4,577,626 + fabG-2 SO4382 0.45 -1.3
4,577,659 + fabG-2 SO4382 0.49 -3.1
4,577,664 + fabG-2 SO4382 0.50 -2.9
4,577,686 + fabG-2 SO4382 0.53 -0.4
4,577,728 - fabG-2 SO4382 0.59 -2.7
4,577,739 + fabG-2 SO4382 0.60 -0.3
4,577,752 + fabG-2 SO4382 0.62 -0.9
4,577,764 + fabG-2 SO4382 0.64 -1.6
4,577,772 - fabG-2 SO4382 0.65 -1.6
4,577,772 - fabG-2 SO4382 0.65 +1.1
4,577,790 + fabG-2 SO4382 0.67 -1.4
4,577,802 + fabG-2 SO4382 0.69 -2.9
4,577,802 + fabG-2 SO4382 0.69 -0.8
4,577,802 + fabG-2 SO4382 0.69 -0.7
4,577,802 + fabG-2 SO4382 0.69 -0.1
4,577,802 + fabG-2 SO4382 0.69 -0.1
4,577,802 + fabG-2 SO4382 0.69 -1.9
4,577,802 + fabG-2 SO4382 0.69 -2.0
4,577,802 + fabG-2 SO4382 0.69 +0.4
4,577,802 + fabG-2 SO4382 0.69 -0.1
4,577,810 - fabG-2 SO4382 0.70 -2.3
4,577,810 - fabG-2 SO4382 0.70 -1.8
4,577,810 - fabG-2 SO4382 0.70 -0.3
4,577,810 - fabG-2 SO4382 0.70 +0.2
4,577,810 - fabG-2 SO4382 0.70 -1.0
4,577,887 + fabG-2 SO4382 0.81 -0.4
4,577,887 + fabG-2 SO4382 0.81 -2.3
4,577,887 + fabG-2 SO4382 0.81 -0.4
4,577,887 + fabG-2 SO4382 0.81 -0.9
4,577,895 - fabG-2 SO4382 0.82 -0.5
4,577,895 - fabG-2 SO4382 0.82 +1.2
4,578,014 + -2.4
4,578,101 + -1.1
4,578,137 - -0.6

Or see this region's nucleotide sequence