Strain Fitness in Shewanella oneidensis MR-1 around SO4206

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
4,370,931	+	tatC	SO4204	0.45	+3.6
4,371,124	-	tatC	SO4204	0.70	+3.7
4,371,216	-	tatC	SO4204	0.83	+1.5
4,371,305	+				+4.6
4,371,429	+				-1.5
4,371,434	+				+0.9
4,371,434	+				+0.8
4,371,442	-		SO4205	0.11	+1.0
4,371,442	-		SO4205	0.11	+0.6
4,371,442	-		SO4205	0.11	+0.2
4,371,462	+		SO4205	0.14	-0.9
4,371,534	-		SO4205	0.28	+1.5
4,371,541	+		SO4205	0.30	-2.7
4,371,602	+		SO4205	0.41	-2.5
4,371,604	+		SO4205	0.42	-0.3
4,371,706	-		SO4205	0.61	+1.2
4,371,706	-		SO4205	0.61	+0.3
4,371,802	+		SO4205	0.80	-3.3
4,371,884	+				-0.5
4,371,889	+				+1.3
4,371,889	+				+0.0
4,372,197	+		SO4206	0.36	+1.7
4,372,232	+		SO4206	0.40	+0.5
4,372,232	+		SO4206	0.40	-0.7
4,372,240	-		SO4206	0.41	-0.0
4,372,257	+		SO4206	0.43	-1.6
4,372,375	-		SO4206	0.58	+3.7
4,372,377	+		SO4206	0.58	+0.1
4,372,385	-		SO4206	0.59	+2.3
4,372,399	+		SO4206	0.61	-1.1
4,372,442	+		SO4206	0.66	+0.4
4,372,450	-		SO4206	0.67	-0.1
4,372,530	+		SO4206	0.77	+0.9
4,372,558	+		SO4206	0.81	+0.4
4,372,621	-		SO4206	0.89	+0.2
4,372,780	+				+1.2
4,372,795	+				+1.7
4,372,795	+				-0.5
4,372,838	+				+1.8
4,372,976	-		SO4207	0.14	+1.2
4,372,981	+		SO4207	0.15	+0.6
4,373,048	+		SO4207	0.18	+0.7
4,373,083	+		SO4207	0.20	+1.4
4,373,095	+		SO4207	0.21	+2.1
4,373,103	-		SO4207	0.21	+0.2
4,373,260	+		SO4207	0.30	+0.0
4,373,338	+		SO4207	0.34	+0.6
4,373,556	+		SO4207	0.45	+0.0
4,373,564	-		SO4207	0.46	+1.4
4,373,564	-		SO4207	0.46	+3.0
4,373,595	-		SO4207	0.47	+1.3
4,373,642	-		SO4207	0.50	-2.2
4,373,702	+		SO4207	0.53	+0.1
4,373,710	-		SO4207	0.54	+3.8