Strain Fitness in Shewanella oneidensis MR-1 around SO3975

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
4,111,308	+				-0.6
4,111,364	+				-2.0
4,111,378	+				-1.8
4,111,407	+				-0.8
4,111,407	+				-0.5
4,111,567	-				+1.8
4,111,567	-				+0.4
4,111,623	+				+0.3
4,111,623	+				-0.6
4,111,623	+				-1.4
4,111,631	-				-2.1
4,111,631	-				-0.6
4,111,631	-				+2.8
4,111,631	-				+0.5
4,111,631	-				+0.5
4,111,631	-				-0.4
4,111,631	-				+0.5
4,111,680	+				-1.8
4,111,680	+				+1.2
4,111,680	+				+1.6
4,111,687	+				+0.2
4,111,687	+				+0.7
4,111,688	-				-1.3
4,111,688	-				-0.5
4,111,688	-				-0.3
4,111,688	-				+0.1
4,111,688	-				+0.2
4,111,688	-				+0.9
4,111,688	-				+0.8
4,111,699	+				+0.7
4,111,763	+				-0.2
4,111,769	+				-1.2
4,111,771	-				-2.6
4,111,826	+		SO3974	0.18	-2.7
4,111,826	+		SO3974	0.18	-0.2
4,111,826	-		SO3974	0.18	+2.4
4,111,833	-		SO3974	0.19	+1.3
4,111,839	-		SO3974	0.20	+0.7
4,111,861	-		SO3974	0.24	+1.3
4,111,863	-		SO3974	0.24	+0.6
4,111,876	-		SO3974	0.27	-2.2
4,111,887	+		SO3974	0.29	+0.3
4,111,911	+		SO3974	0.33	+1.0
4,111,966	-		SO3974	0.43	-0.6
4,111,983	+		SO3974	0.46	+0.1
4,111,998	-		SO3974	0.49	-3.2
4,111,999	+		SO3974	0.49	-2.2
4,112,009	+		SO3974	0.51	-1.2
4,112,046	+		SO3974	0.58	-0.0
4,112,089	+		SO3974	0.66	-2.6
4,112,089	+		SO3974	0.66	+0.1
4,112,113	-		SO3974	0.70	-1.8
4,112,286	+				+1.4
4,112,288	+				-0.5
4,112,306	-				+1.3
4,112,377	+				+0.4
4,112,488	-		SO3975	0.24	+0.6
4,112,488	-		SO3975	0.24	+2.0
4,112,593	-		SO3975	0.37	+1.5
4,112,866	+		SO3975	0.71	-1.0
4,113,014	+		SO3975	0.90	+0.7
4,113,288	+				-0.8
4,113,288	+				+1.0
4,113,288	+				+0.7
4,113,288	+				-2.1
4,113,296	-				+0.6
4,113,296	-				+1.8
4,113,296	-				-1.0
4,113,704	+				+0.4
4,113,704	+				+0.4
4,113,808	+		SO3976	0.23	+1.6
4,113,816	+		SO3976	0.24	+0.7
4,113,826	+		SO3976	0.25	-1.4
4,113,904	+		SO3976	0.35	-1.0
4,113,918	+		SO3976	0.37	-0.3
4,113,918	+		SO3976	0.37	-2.2
4,113,918	+		SO3976	0.37	+1.6
4,113,934	+		SO3976	0.39	+0.1
4,113,937	-		SO3976	0.39	-0.2
4,113,947	-		SO3976	0.41	+0.6
4,113,947	-		SO3976	0.41	+0.4
4,114,067	-		SO3976	0.56	-1.9