Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3933 and SO3934 are separated by 71 nucleotides SO3934 and vacB are separated by 0 nucleotides
SO3933: SO3933 - membrane protein, putative (NCBI ptt file), at 4,077,285 to 4,078,709
SO3933
SO3934: SO3934 - RNA methyltransferase, TrmH family, group 3 (NCBI ptt file), at 4,078,781 to 4,079,521
SO3934
SO3935: vacB - ribonuclease R (NCBI ptt file), at 4,079,522 to 4,081,948
vacB
Position (kb) 4078
4079
4080 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4078.108 kb on - strand, within SO3933 at 4078.225 kb on + strand, within SO3933 at 4078.231 kb on - strand, within SO3933 at 4078.246 kb on + strand, within SO3933 at 4078.254 kb on - strand, within SO3933 at 4078.276 kb on + strand, within SO3933 at 4078.276 kb on + strand, within SO3933 at 4078.284 kb on - strand, within SO3933 at 4078.369 kb on + strand, within SO3933 at 4078.442 kb on - strand, within SO3933 at 4078.484 kb on - strand, within SO3933 at 4078.484 kb on - strand, within SO3933 at 4078.811 kb on - strand at 4078.870 kb on - strand, within SO3934 at 4078.907 kb on + strand, within SO3934 at 4078.907 kb on + strand, within SO3934 at 4078.915 kb on - strand, within SO3934 at 4078.915 kb on - strand, within SO3934 at 4078.915 kb on - strand, within SO3934 at 4078.915 kb on - strand, within SO3934 at 4078.921 kb on - strand, within SO3934 at 4079.124 kb on + strand, within SO3934 at 4079.150 kb on - strand, within SO3934 at 4079.150 kb on - strand, within SO3934 at 4079.193 kb on - strand, within SO3934 at 4079.200 kb on + strand, within SO3934 at 4079.318 kb on - strand, within SO3934 at 4079.325 kb on - strand, within SO3934 at 4079.468 kb on - strand at 4079.485 kb on - strand at 4079.485 kb on - strand at 4079.640 kb on + strand at 4079.648 kb on - strand at 4079.742 kb on + strand at 4079.750 kb on - strand at 4079.800 kb on + strand, within vacB at 4079.804 kb on - strand, within vacB at 4079.808 kb on - strand, within vacB at 4079.829 kb on - strand, within vacB at 4079.829 kb on - strand, within vacB at 4079.928 kb on - strand, within vacB at 4079.928 kb on - strand, within vacB at 4080.081 kb on + strand, within vacB at 4080.180 kb on + strand, within vacB at 4080.430 kb on + strand, within vacB at 4080.430 kb on + strand, within vacB at 4080.438 kb on - strand, within vacB at 4080.438 kb on - strand, within vacB at 4080.516 kb on + strand, within vacB
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 4,078,108 - SO3933 0.58 -2.1 4,078,225 + SO3933 0.66 +0.7 4,078,231 - SO3933 0.66 +0.4 4,078,246 + SO3933 0.67 -0.8 4,078,254 - SO3933 0.68 +0.4 4,078,276 + SO3933 0.70 +0.3 4,078,276 + SO3933 0.70 +0.6 4,078,284 - SO3933 0.70 +1.6 4,078,369 + SO3933 0.76 -0.2 4,078,442 - SO3933 0.81 +0.4 4,078,484 - SO3933 0.84 -2.3 4,078,484 - SO3933 0.84 +0.0 4,078,811 - +1.3 4,078,870 - SO3934 0.12 +0.5 4,078,907 + SO3934 0.17 +1.6 4,078,907 + SO3934 0.17 +2.2 4,078,915 - SO3934 0.18 -0.6 4,078,915 - SO3934 0.18 +1.8 4,078,915 - SO3934 0.18 +1.3 4,078,915 - SO3934 0.18 +1.7 4,078,921 - SO3934 0.19 +2.6 4,079,124 + SO3934 0.46 -1.0 4,079,150 - SO3934 0.50 +3.5 4,079,150 - SO3934 0.50 +1.1 4,079,193 - SO3934 0.56 -0.4 4,079,200 + SO3934 0.57 -0.7 4,079,318 - SO3934 0.72 +2.6 4,079,325 - SO3934 0.73 -0.2 4,079,468 - -0.2 4,079,485 - +1.3 4,079,485 - +1.6 4,079,640 + +0.3 4,079,648 - -0.8 4,079,742 + +1.6 4,079,750 - -0.2 4,079,800 + vacB SO3935 0.11 +1.1 4,079,804 - vacB SO3935 0.12 +1.9 4,079,808 - vacB SO3935 0.12 +0.0 4,079,829 - vacB SO3935 0.13 +0.1 4,079,829 - vacB SO3935 0.13 +1.0 4,079,928 - vacB SO3935 0.17 +1.1 4,079,928 - vacB SO3935 0.17 -0.5 4,080,081 + vacB SO3935 0.23 -0.4 4,080,180 + vacB SO3935 0.27 +0.5 4,080,430 + vacB SO3935 0.37 -1.3 4,080,430 + vacB SO3935 0.37 +2.8 4,080,438 - vacB SO3935 0.38 +0.3 4,080,438 - vacB SO3935 0.38 +1.4 4,080,516 + vacB SO3935 0.41 +3.7
Or see this region's nucleotide sequence