Strain Fitness in Shewanella oneidensis MR-1 around SO3865

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
4,010,632	+	modA	SO3863	0.76	+0.1
4,010,690	-	modA	SO3863	0.84	-1.3
4,010,709	+	modA	SO3863	0.86	+0.3
4,010,717	-	modA	SO3863	0.87	-0.6
4,010,717	-	modA	SO3863	0.87	-3.3
4,010,722	+	modA	SO3863	0.88	+0.5
4,010,753	-				-1.9
4,010,785	-				+0.3
4,010,810	+				-1.6
4,010,879	-				-0.2
4,010,887	+				-1.3
4,010,895	-	modB	SO3864	0.11	+1.3
4,010,913	-	modB	SO3864	0.13	+0.2
4,010,913	-	modB	SO3864	0.13	+0.4
4,011,036	+	modB	SO3864	0.30	-2.0
4,011,122	+	modB	SO3864	0.42	+0.8
4,011,177	+	modB	SO3864	0.49	+1.9
4,011,185	-	modB	SO3864	0.50	-2.7
4,011,216	-	modB	SO3864	0.54	-0.2
4,011,355	+	modB	SO3864	0.73	-1.2
4,011,489	-				+0.1
4,011,590	-				+1.6
4,011,645	+				-0.2
4,011,653	-				-2.7
4,011,659	-	modC	SO3865	0.10	+0.1
4,011,663	-	modC	SO3865	0.11	+0.8
4,011,918	+	modC	SO3865	0.34	+0.2
4,012,005	+	modC	SO3865	0.42	+0.2
4,012,041	+	modC	SO3865	0.46	-0.6
4,012,053	+	modC	SO3865	0.47	-0.2
4,012,105	+	modC	SO3865	0.51	+1.8
4,012,216	+	modC	SO3865	0.62	+1.1
4,012,303	-	modC	SO3865	0.70	+3.0
4,012,316	+	modC	SO3865	0.71	+0.8
4,012,396	+	modC	SO3865	0.78	-2.3
4,012,396	-	modC	SO3865	0.78	-0.6
4,012,420	+	modC	SO3865	0.80	+1.7
4,012,502	-	modC	SO3865	0.88	-1.1
4,012,522	+	modC	SO3865	0.90	-2.4
4,012,540	+				+0.4
4,012,583	+				-2.4
4,012,583	+				-0.6
4,012,591	-				+1.2
4,012,591	-				-0.7
4,012,792	-				+0.3
4,012,811	+				-2.3
4,012,935	-				-2.3
4,012,947	-				+0.6
4,013,030	+				-2.8
4,013,156	+				-2.0
4,013,164	-				-1.3
4,013,189	+				-0.2
4,013,199	+				-1.2
4,013,300	-		SO3866	0.17	-0.4
4,013,302	+		SO3866	0.17	+1.1
4,013,310	-		SO3866	0.18	+2.4
4,013,314	+		SO3866	0.18	-0.4
4,013,322	-		SO3866	0.19	-0.8
4,013,322	-		SO3866	0.19	+1.1
4,013,422	-		SO3866	0.28	+0.8
4,013,430	+		SO3866	0.28	+0.5
4,013,504	+		SO3866	0.35	+0.2
4,013,509	+		SO3866	0.36	-0.6
4,013,509	+		SO3866	0.36	+0.5
4,013,512	-		SO3866	0.36	-0.2
4,013,517	-		SO3866	0.36	+0.6
4,013,622	+		SO3866	0.46	-1.8