Strain Fitness in Shewanella oneidensis MR-1 around SO3657

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
3,809,847	-				+0.4
3,809,877	+		SO3655	0.14	-0.8
3,809,893	+		SO3655	0.17	+1.2
3,810,017	+		SO3655	0.39	+1.9
3,810,045	+		SO3655	0.44	+2.1
3,810,105	-		SO3655	0.55	+1.3
3,810,131	-		SO3655	0.60	-0.2
3,810,215	-		SO3655	0.75	-2.4
3,810,234	+		SO3655	0.78	-0.4
3,810,242	-		SO3655	0.79	-0.6
3,810,257	-		SO3655	0.82	+2.3
3,810,262	-		SO3655	0.83	+1.3
3,810,262	-		SO3655	0.83	-0.5
3,810,262	-		SO3655	0.83	-0.1
3,810,262	-		SO3655	0.83	+0.6
3,810,423	+				-1.8
3,810,500	-		SO3656	0.23	+0.9
3,810,517	+		SO3656	0.28	-3.0
3,810,517	+		SO3656	0.28	-0.7
3,810,517	+		SO3656	0.28	-2.6
3,810,682	+		SO3656	0.80	+1.4
3,810,705	+		SO3656	0.87	+0.3
3,810,711	-		SO3656	0.89	+3.6
3,810,831	+				+0.3
3,810,831	+				-0.1
3,810,839	-				-0.6
3,810,839	-				-1.4
3,810,839	-				+0.9
3,810,943	+		SO3657	0.16	-0.3
3,810,945	-		SO3657	0.16	+1.1
3,810,945	-		SO3657	0.16	-0.7
3,810,959	-		SO3657	0.18	-2.4
3,810,989	-		SO3657	0.23	-1.4
3,811,039	-		SO3657	0.30	+1.1
3,811,176	+		SO3657	0.50	-0.5
3,811,273	-		SO3657	0.64	-0.2
3,811,380	-		SO3657	0.79	-0.8
3,811,490	-				-0.1
3,811,501	+				-2.6
3,811,501	+				+0.8
3,811,509	-				+0.8
3,811,509	-				-1.2
3,811,663	+				-0.6
3,811,682	+				-0.5
3,811,714	-				-0.7
3,811,744	+				-0.4
3,811,752	+				-3.6
3,811,760	-				+1.8
3,811,851	-				+1.4
3,811,941	-		SO3659	0.17	-0.7
3,811,941	-		SO3659	0.17	-0.1
3,811,987	-		SO3659	0.25	+2.0
3,812,112	-		SO3659	0.48	+1.6
3,812,161	-		SO3659	0.57	-1.2
3,812,171	+		SO3659	0.59	-3.3
3,812,265	+		SO3659	0.76	+0.9
3,812,273	-		SO3659	0.78	-0.1
3,812,369	+				+0.4
3,812,376	-				+0.4
3,812,379	+				-0.0
3,812,435	+				-0.5
3,812,435	+				+0.7
3,812,435	+				-0.1
3,812,443	-				-0.0
3,812,443	-				-1.4