Strain Fitness in Shewanella oneidensis MR-1 around SO3516

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
3,669,304	-		SO3514	0.84	+0.2
3,669,355	-		SO3514	0.86	-2.3
3,669,381	+		SO3514	0.87	-0.3
3,669,388	-		SO3514	0.87	-0.2
3,669,402	+		SO3514	0.88	+2.6
3,669,645	+				+0.4
3,669,645	+				-1.2
3,669,645	+				+1.1
3,669,653	-				-3.0
3,670,002	+				-2.1
3,670,008	+				+0.8
3,670,018	-				+0.7
3,670,018	-				-0.6
3,670,058	+				+0.4
3,670,066	-				+2.5
3,670,094	-				-0.1
3,670,103	+				-0.4
3,670,184	-				+1.4
3,670,237	+				-1.5
3,670,237	+				-0.3
3,670,293	-		SO3516	0.15	-1.3
3,670,298	-		SO3516	0.15	+0.1
3,670,412	+		SO3516	0.26	+1.0
3,670,414	-		SO3516	0.26	-0.5
3,670,420	-		SO3516	0.27	-1.6
3,670,432	+		SO3516	0.28	+0.1
3,670,510	-		SO3516	0.36	-1.6
3,670,533	+		SO3516	0.38	+1.8
3,670,533	+		SO3516	0.38	+1.7
3,670,581	+		SO3516	0.43	+1.0
3,670,599	+		SO3516	0.45	+0.8
3,670,599	+		SO3516	0.45	+0.6
3,670,607	-		SO3516	0.45	+0.8
3,670,616	-		SO3516	0.46	-0.1
3,670,616	-		SO3516	0.46	+0.3
3,670,644	-		SO3516	0.49	-0.6
3,670,927	+		SO3516	0.77	+0.5
3,670,935	-		SO3516	0.78	+1.7
3,670,979	-		SO3516	0.82	+0.9
3,671,050	+		SO3516	0.89	-2.2
3,671,058	-		SO3516	0.90	+0.9
3,671,109	+				+1.0
3,671,109	+				-1.8
3,671,137	+				-1.3
3,671,161	-				-0.5
3,671,163	-				+0.7
3,671,173	-				-0.1
3,671,223	+				+0.4
3,671,255	+				+0.6
3,671,333	+				-1.1
3,671,576	-	ndh	SO3517	0.17	+0.7
3,671,577	+	ndh	SO3517	0.17	+1.9
3,671,608	+	ndh	SO3517	0.19	+0.9
3,671,608	+	ndh	SO3517	0.19	+1.9
3,671,608	+	ndh	SO3517	0.19	-1.6
3,671,633	-	ndh	SO3517	0.21	+2.5
3,671,637	-	ndh	SO3517	0.21	+0.7
3,671,647	-	ndh	SO3517	0.22	+2.4
3,671,683	+	ndh	SO3517	0.25	+1.4
3,671,683	+	ndh	SO3517	0.25	+2.2
3,671,691	-	ndh	SO3517	0.26	+2.6
3,671,691	-	ndh	SO3517	0.26	+0.9
3,671,781	-	ndh	SO3517	0.33	+1.6
3,671,834	+	ndh	SO3517	0.37	-1.3
3,671,855	+	ndh	SO3517	0.38	+1.1
3,671,855	+	ndh	SO3517	0.38	+1.2
3,671,855	+	ndh	SO3517	0.38	+1.2
3,671,855	+	ndh	SO3517	0.38	+1.8
3,671,863	-	ndh	SO3517	0.39	+1.0
3,671,863	-	ndh	SO3517	0.39	+3.0
3,672,024	+	ndh	SO3517	0.51	+2.1
3,672,114	+	ndh	SO3517	0.58	+1.5
3,672,121	-	ndh	SO3517	0.59	+2.2