Strain Fitness in Shewanella oneidensis MR-1 around SO3188

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
3,325,000	+	rfbA	SO3186	0.50	+2.2
3,325,008	-	rfbA	SO3186	0.51	+0.4
3,325,014	+	rfbA	SO3186	0.51	+1.4
3,325,022	-	rfbA	SO3186	0.52	+1.7
3,325,022	-	rfbA	SO3186	0.52	+0.9
3,325,030	-	rfbA	SO3186	0.53	-2.6
3,325,040	-	rfbA	SO3186	0.54	+0.3
3,325,108	-	rfbA	SO3186	0.62	-0.9
3,325,139	-	rfbA	SO3186	0.65	+2.2
3,325,169	-	rfbA	SO3186	0.68	-0.6
3,325,169	-	rfbA	SO3186	0.68	-0.5
3,325,173	+	rfbA	SO3186	0.69	+2.1
3,325,173	+	rfbA	SO3186	0.69	+2.2
3,325,173	+	rfbA	SO3186	0.69	+2.2
3,325,191	-	rfbA	SO3186	0.71	+0.9
3,325,191	-	rfbA	SO3186	0.71	+0.1
3,325,248	-	rfbA	SO3186	0.77	+1.5
3,325,290	+	rfbA	SO3186	0.82	+2.8
3,325,298	-	rfbA	SO3186	0.83	+0.8
3,325,298	-	rfbA	SO3186	0.83	+0.4
3,325,334	-	rfbA	SO3186	0.86	+1.9
3,325,336	+	rfbA	SO3186	0.87	+1.9
3,325,344	-	rfbA	SO3186	0.88	+1.6
3,325,400	+				+2.6
3,325,444	-				-1.9
3,325,445	-				+2.3
3,325,478	+				+1.9
3,325,486	-				+2.4
3,325,540	+				+3.8
3,325,548	-				+0.8
3,325,548	-				+0.9
3,325,556	-				+1.7
3,325,570	-				+0.9
3,325,570	-				+1.9
3,325,576	+				+2.1
3,325,579	+				+2.0
3,325,659	+				+3.4
3,325,659	+				+2.8
3,325,659	+				+3.3
3,325,659	+				+3.9
3,325,659	+				+3.9
3,325,659	+				+3.5
3,325,659	+				+2.8
3,325,659	+				+2.8
3,325,659	+				+4.0
3,325,667	-				+1.0
3,325,667	-				-0.8
3,325,667	-				+1.2
3,325,667	-				-0.9
3,325,667	-				-1.4
3,325,667	-				+0.5
3,325,667	-				+0.7
3,325,667	-				-0.2
3,325,667	-				-0.9
3,325,667	-				+2.1
3,325,667	-				+0.2
3,325,667	-				+1.0
3,325,669	+				+4.4
3,325,669	+				+2.6
3,325,676	-				-0.1
3,325,677	-				+0.5
3,325,781	+				+2.2
3,325,877	+				+3.2
3,325,905	-				+1.5
3,325,905	-				+0.0
3,325,917	-				-0.5
3,325,917	-				+2.3
3,325,917	-				+4.0
3,325,917	-				-1.3
3,325,927	+				+2.7
3,325,938	+				+3.1
3,325,938	+				+3.8
3,325,946	-				-0.4
3,325,946	-				+2.5
3,325,979	+				+4.0
3,325,979	+				+4.0
3,325,987	-				+4.6
3,325,997	+				+4.0
3,326,002	+				+4.1
3,326,005	-				+3.6
3,326,056	-	rfbB	SO3188	0.13	+2.6
3,326,395	-	rfbB	SO3188	0.43	+3.0
3,326,464	+	rfbB	SO3188	0.49	+4.7
3,326,478	+	rfbB	SO3188	0.50	+4.1
3,326,515	-	rfbB	SO3188	0.53	+5.3
3,326,681	+	rfbB	SO3188	0.68	+4.2
3,326,681	+	rfbB	SO3188	0.68	+4.7
3,326,681	+	rfbB	SO3188	0.68	+3.0
3,326,689	-	rfbB	SO3188	0.69	+4.6
3,326,689	-	rfbB	SO3188	0.69	+2.1
3,326,689	-	rfbB	SO3188	0.69	+4.7
3,326,689	-	rfbB	SO3188	0.69	+3.2
3,326,689	-	rfbB	SO3188	0.69	+4.3
3,326,689	-	rfbB	SO3188	0.69	+4.5
3,326,696	+	rfbB	SO3188	0.70	+4.9
3,326,696	+	rfbB	SO3188	0.70	+3.9
3,326,704	-	rfbB	SO3188	0.70	+3.4
3,326,711	+	rfbB	SO3188	0.71	+4.0
3,326,711	+	rfbB	SO3188	0.71	+3.8
3,326,719	-	rfbB	SO3188	0.72	+2.2
3,326,719	-	rfbB	SO3188	0.72	+4.2
3,326,719	-	rfbB	SO3188	0.72	+3.5
3,326,719	-	rfbB	SO3188	0.72	+2.9
3,326,719	-	rfbB	SO3188	0.72	+3.8
3,326,719	-	rfbB	SO3188	0.72	+4.0
3,326,719	-	rfbB	SO3188	0.72	+2.4
3,326,719	-	rfbB	SO3188	0.72	+3.6
3,326,719	-	rfbB	SO3188	0.72	+2.3
3,326,719	-	rfbB	SO3188	0.72	+3.5
3,326,719	-	rfbB	SO3188	0.72	+4.1
3,326,783	+	rfbB	SO3188	0.77	+5.0
3,326,783	+	rfbB	SO3188	0.77	+3.7
3,326,791	-	rfbB	SO3188	0.78	+3.1
3,326,791	-	rfbB	SO3188	0.78	+3.2
3,326,791	-	rfbB	SO3188	0.78	+4.2
3,326,791	-	rfbB	SO3188	0.78	+3.4
3,326,791	-	rfbB	SO3188	0.78	+4.2
3,326,791	-	rfbB	SO3188	0.78	+3.9
3,326,791	-	rfbB	SO3188	0.78	+3.3
3,326,791	-	rfbB	SO3188	0.78	+3.3
3,326,803	+	rfbB	SO3188	0.79	+5.5
3,326,803	+	rfbB	SO3188	0.79	+3.0
3,326,803	+	rfbB	SO3188	0.79	+5.0
3,326,803	+	rfbB	SO3188	0.79	+3.8
3,326,803	-	rfbB	SO3188	0.79	+4.6
3,326,806	+	rfbB	SO3188	0.79	+4.5
3,326,811	-	rfbB	SO3188	0.80	+4.5
3,326,811	-	rfbB	SO3188	0.80	+2.4
3,326,811	-	rfbB	SO3188	0.80	+2.9
3,326,962	+				+3.7
3,326,962	+				+5.0
3,326,962	+				+4.5
3,326,962	+				+3.9
3,326,962	+				+2.2
3,326,962	+				+2.8
3,326,962	+				+4.8
3,326,962	+				+6.3
3,326,970	-				+2.7
3,326,970	-				+4.7
3,326,970	-				+4.5
3,326,970	-				+3.1
3,326,994	-				+3.9
3,327,135	+				+0.8
3,327,135	+				+0.2
3,327,143	-				+0.5
3,327,143	-				-1.2
3,327,143	-				+0.9
3,327,153	-		SO3189	0.11	+0.1
3,327,211	-		SO3189	0.17	-0.2
3,327,211	-		SO3189	0.17	+0.5
3,327,239	-		SO3189	0.19	+0.5
3,327,265	-		SO3189	0.22	-1.1
3,327,275	-		SO3189	0.23	+0.6
3,327,482	+		SO3189	0.43	+0.2
3,327,490	-		SO3189	0.44	-0.4
3,327,500	-		SO3189	0.45	-2.9
3,327,535	-		SO3189	0.48	+0.6
3,327,535	-		SO3189	0.48	-2.2
3,327,538	+		SO3189	0.48	+2.0
3,327,546	-		SO3189	0.49	-0.1
3,327,546	-		SO3189	0.49	+0.4
3,327,604	+		SO3189	0.55	-0.2
3,327,604	+		SO3189	0.55	+0.6
3,327,607	-		SO3189	0.55	+1.1
3,327,612	-		SO3189	0.56	+1.2
3,327,612	-				+2.9
3,327,612	-		SO3189	0.56	-0.3
3,327,624	-		SO3189	0.57	-2.2
3,327,660	+		SO3189	0.60	+1.6
3,327,693	-		SO3189	0.64	-2.3
3,327,750	+		SO3189	0.69	+1.2
3,327,755	+		SO3189	0.70	-2.8
3,327,762	+		SO3189	0.70	+0.2
3,327,762	+		SO3189	0.70	+0.8
3,327,762	+		SO3189	0.70	+0.6
3,327,762	+		SO3189	0.70	+1.2
3,327,762	+		SO3189	0.70	-0.7
3,327,762	+		SO3189	0.70	+0.7
3,327,762	+		SO3189	0.70	+0.7
3,327,763	-		SO3189	0.70	-2.0
3,327,770	-		SO3189	0.71	-0.2
3,327,770	-		SO3189	0.71	-0.2
3,327,770	-		SO3189	0.71	-3.4
3,327,770	-		SO3189	0.71	+0.3
3,327,770	-		SO3189	0.71	+1.9
3,327,770	-		SO3189	0.71	+0.5
3,327,770	-		SO3189	0.71	-2.1
3,327,780	-		SO3189	0.72	-1.1
3,327,788	+		SO3189	0.73	+1.6
3,327,828	-		SO3189	0.77	+0.3
3,327,866	+		SO3189	0.81	-2.6