Strain Fitness in Shewanella oneidensis MR-1 around SO3185

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
3,322,575	-		SO3183	0.82	+4.0
3,322,577	-		SO3183	0.83	+2.3
3,322,671	-				+3.3
3,322,671	-				+5.1
3,322,715	-				+4.2
3,322,717	+				+4.6
3,322,717	+				+5.7
3,322,717	+				+4.4
3,322,718	+				+4.7
3,322,718	+				+4.1
3,322,725	-				+3.8
3,322,726	-				+3.3
3,322,741	-				+4.1
3,322,776	+				+2.9
3,322,776	+				+6.5
3,322,776	+				+2.4
3,322,784	-				-2.1
3,322,784	-				-1.9
3,322,784	-				+2.0
3,322,784	-				-0.0
3,322,784	-				-0.4
3,322,784	-				-1.0
3,322,811	+				+5.3
3,322,830	+		SO3184	0.11	+5.2
3,322,835	+		SO3184	0.12	+5.5
3,322,838	-		SO3184	0.12	+5.4
3,322,843	-		SO3184	0.13	+4.6
3,322,857	+		SO3184	0.15	+4.8
3,322,865	-		SO3184	0.16	+5.1
3,322,867	+		SO3184	0.16	+4.5
3,322,867	-		SO3184	0.16	+5.6
3,322,911	-		SO3184	0.23	+6.1
3,322,959	+		SO3184	0.29	+5.9
3,322,967	-		SO3184	0.30	+5.6
3,322,968	-		SO3184	0.30	+5.3
3,322,968	-		SO3184	0.30	+5.5
3,322,973	+		SO3184	0.31	+5.1
3,322,973	+		SO3184	0.31	+6.2
3,322,980	+		SO3184	0.32	+4.7
3,322,981	-		SO3184	0.32	+5.1
3,322,981	-		SO3184	0.32	+5.6
3,322,981	-		SO3184	0.32	+5.1
3,322,986	-		SO3184	0.33	+4.4
3,323,019	+		SO3184	0.37	+5.0
3,323,019	+		SO3184	0.37	+4.3
3,323,019	+		SO3184	0.37	+4.7
3,323,019	+		SO3184	0.37	+5.9
3,323,019	+		SO3184	0.37	+4.9
3,323,019	+		SO3184	0.37	+5.3
3,323,019	+		SO3184	0.37	+5.3
3,323,019	+		SO3184	0.37	+4.7
3,323,019	+		SO3184	0.37	+4.9
3,323,019	+		SO3184	0.37	+3.8
3,323,019	+		SO3184	0.37	+6.0
3,323,019	+		SO3184	0.37	+5.6
3,323,019	+		SO3184	0.37	+4.9
3,323,019	+		SO3184	0.37	+4.9
3,323,019	+		SO3184	0.37	+4.9
3,323,019	+		SO3184	0.37	+4.7
3,323,019	+		SO3184	0.37	+8.1
3,323,019	+		SO3184	0.37	+5.9
3,323,019	+		SO3184	0.37	+4.4
3,323,019	+		SO3184	0.37	+5.1
3,323,019	+		SO3184	0.37	+4.1
3,323,019	+		SO3184	0.37	+4.3
3,323,019	+		SO3184	0.37	+4.8
3,323,019	+		SO3184	0.37	+4.8
3,323,019	+		SO3184	0.37	+6.0
3,323,019	+		SO3184	0.37	+5.1
3,323,019	+		SO3184	0.37	+6.5
3,323,019	+		SO3184	0.37	+5.6
3,323,019	+		SO3184	0.37	+5.3
3,323,019	+		SO3184	0.37	+6.1
3,323,019	+		SO3184	0.37	+4.6
3,323,019	+		SO3184	0.37	+4.4
3,323,019	+		SO3184	0.37	+4.5
3,323,019	+		SO3184	0.37	+2.6
3,323,019	+		SO3184	0.37	+5.1
3,323,019	+		SO3184	0.37	+5.5
3,323,019	+		SO3184	0.37	+5.1
3,323,021	-		SO3184	0.38	+5.4
3,323,027	-		SO3184	0.39	+4.2
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+4.8
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+4.8
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+4.7
3,323,027	-		SO3184	0.39	+4.9
3,323,027	-		SO3184	0.39	+5.7
3,323,027	-		SO3184	0.39	+4.7
3,323,027	-		SO3184	0.39	+4.3
3,323,027	-		SO3184	0.39	+4.7
3,323,027	-		SO3184	0.39	+6.2
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+6.3
3,323,027	-		SO3184	0.39	+4.7
3,323,027	-		SO3184	0.39	+5.1
3,323,027	-		SO3184	0.39	+4.8
3,323,027	-		SO3184	0.39	+4.8
3,323,027	-		SO3184	0.39	+5.1
3,323,027	-		SO3184	0.39	+5.5
3,323,027	-		SO3184	0.39	+5.3
3,323,027	-		SO3184	0.39	+4.5
3,323,027	-		SO3184	0.39	+5.0
3,323,027	-		SO3184	0.39	+5.3
3,323,027	-		SO3184	0.39	+5.3
3,323,027	-		SO3184	0.39	+6.2
3,323,027	-		SO3184	0.39	+5.9
3,323,027	-		SO3184	0.39	+6.5
3,323,027	-		SO3184	0.39	+4.5
3,323,027	-		SO3184	0.39	+4.9
3,323,027	-		SO3184	0.39	+5.1
3,323,027	-		SO3184	0.39	+3.2
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+5.5
3,323,027	-		SO3184	0.39	+4.7
3,323,027	-		SO3184	0.39	+4.6
3,323,027	-		SO3184	0.39	+4.8
3,323,027	-		SO3184	0.39	+5.3
3,323,027	-		SO3184	0.39	+5.8
3,323,027	-		SO3184	0.39	+5.4
3,323,027	-		SO3184	0.39	+4.6
3,323,027	-		SO3184	0.39	+4.6
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+5.1
3,323,027	-		SO3184	0.39	+5.0
3,323,027	-		SO3184	0.39	+4.5
3,323,027	-		SO3184	0.39	+3.6
3,323,027	-		SO3184	0.39	+4.1
3,323,027	-		SO3184	0.39	+3.5
3,323,027	-		SO3184	0.39	+6.0
3,323,027	-		SO3184	0.39	+4.5
3,323,027	-		SO3184	0.39	+4.4
3,323,027	-		SO3184	0.39	+4.1
3,323,027	-		SO3184	0.39	+5.5
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+5.6
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+5.0
3,323,027	-		SO3184	0.39	+4.7
3,323,027	-		SO3184	0.39	+4.8
3,323,027	-		SO3184	0.39	+5.6
3,323,027	-		SO3184	0.39	+5.6
3,323,027	-		SO3184	0.39	+3.6
3,323,027	-		SO3184	0.39	+5.2
3,323,027	-		SO3184	0.39	+5.4
3,323,027	-		SO3184	0.39	+4.4
3,323,027	-		SO3184	0.39	+5.1
3,323,109	+		SO3184	0.50	+5.4
3,323,109	+		SO3184	0.50	+3.4
3,323,109	+		SO3184	0.50	+6.1
3,323,117	-		SO3184	0.51	+5.1
3,323,117	-		SO3184	0.51	+5.5
3,323,117	-		SO3184	0.51	+4.2
3,323,117	-		SO3184	0.51	+5.5
3,323,117	-		SO3184	0.51	+5.8
3,323,117	-		SO3184	0.51	+5.1
3,323,117	-		SO3184	0.51	+4.8
3,323,142	+		SO3184	0.54	+5.4
3,323,142	+		SO3184	0.54	+4.5
3,323,142	+		SO3184	0.54	+5.8
3,323,150	-		SO3184	0.56	+5.5
3,323,150	-		SO3184	0.56	+5.2
3,323,150	-		SO3184	0.56	+5.3
3,323,150	-		SO3184	0.56	+4.4
3,323,150	-		SO3184	0.56	+1.9
3,323,154	+		SO3184	0.56	+4.6
3,323,154	+		SO3184	0.56	+5.0
3,323,154	+		SO3184	0.56	+5.6
3,323,162	-		SO3184	0.57	+4.8
3,323,162	-		SO3184	0.57	+3.7
3,323,162	-		SO3184	0.57	+6.0
3,323,162	-		SO3184	0.57	+5.5
3,323,162	-		SO3184	0.57	+5.5
3,323,185	-		SO3184	0.60	+4.7
3,323,215	-		SO3184	0.65	+4.5
3,323,251	-		SO3184	0.70	+5.0
3,323,256	-		SO3184	0.70	+5.4
3,323,256	-		SO3184	0.70	+5.2
3,323,256	-		SO3184	0.70	+6.1
3,323,301	+		SO3184	0.76	+5.0
3,323,309	-		SO3184	0.78	+6.7
3,323,309	-		SO3184	0.78	+5.0
3,323,309	-		SO3184	0.78	+6.9
3,323,314	+		SO3184	0.78	+5.9
3,323,314	+		SO3184	0.78	+4.1
3,323,323	-		SO3184	0.80	+2.9
3,323,358	-		SO3184	0.84	+4.8
3,323,371	+		SO3184	0.86	+4.4
3,323,377	-		SO3184	0.87	+3.6
3,323,379	-		SO3184	0.87	+5.9
3,323,416	+				+4.9
3,323,429	+				+2.7
3,323,481	-				+5.5
3,323,489	-				+0.8
3,323,519	+				+6.1
3,323,527	+				+6.6
3,323,527	+				+6.0
3,323,527	+				+6.8
3,323,527	-				+6.2
3,323,530	+				+7.1
3,323,532	-				+5.5
3,323,532	-				+6.1
3,323,535	+				+6.3
3,323,535	-				+6.6
3,323,535	-				+6.3
3,323,537	+				+5.8
3,323,538	-				+6.8
3,323,538	-				+5.5
3,323,538	-				+5.9
3,323,543	-				+5.8
3,323,545	-				+6.1
3,323,545	-				+5.9
3,323,545	-				+6.4
3,323,551	+				+6.3
3,323,587	+		SO3185	0.11	+6.0
3,323,587	+		SO3185	0.11	+6.8
3,323,587	+		SO3185	0.11	+6.3
3,323,589	-		SO3185	0.11	+5.5
3,323,595	-		SO3185	0.12	+5.6
3,323,595	-		SO3185	0.12	+5.8
3,323,599	+		SO3185	0.12	+5.2
3,323,607	-		SO3185	0.13	+6.5
3,323,607	-		SO3185	0.13	+6.6
3,323,607	-		SO3185	0.13	+5.9
3,323,607	-		SO3185	0.13	+6.0
3,323,614	-		SO3185	0.13	+5.8
3,323,614	-		SO3185	0.13	+6.2
3,323,648	-		SO3185	0.17	+6.4
3,323,681	-		SO3185	0.20	+6.0
3,323,767	+		SO3185	0.28	+6.8
3,323,796	+		SO3185	0.30	+6.5
3,323,796	+		SO3185	0.30	+5.5
3,323,796	+		SO3185	0.30	+5.8
3,323,804	-		SO3185	0.31	+6.2
3,323,804	-		SO3185	0.31	+5.4
3,323,804	-		SO3185	0.31	+6.0
3,323,847	-		SO3185	0.35	+6.1
3,323,847	-		SO3185	0.35	+6.1
3,323,847	-		SO3185	0.35	+5.8
3,323,847	-		SO3185	0.35	+5.4
3,323,852	-		SO3185	0.35	+6.0
3,323,873	-				+6.0
3,323,891	+		SO3185	0.39	+6.1
3,323,899	-		SO3185	0.40	+6.5
3,323,899	-		SO3185	0.40	+6.5
3,323,899	-		SO3185	0.40	+7.0
3,323,975	+		SO3185	0.47	+4.7
3,323,980	+		SO3185	0.47	+5.3
3,323,980	+		SO3185	0.47	+6.4
3,323,980	+		SO3185	0.47	+5.4
3,323,980	+		SO3185	0.47	+6.5
3,323,980	+		SO3185	0.47	+5.7
3,323,980	+		SO3185	0.47	+6.2
3,323,980	+		SO3185	0.47	+6.0
3,323,983	-		SO3185	0.48	+6.1
3,323,983	-		SO3185	0.48	+6.0
3,323,988	-		SO3185	0.48	+5.4
3,323,988	-		SO3185	0.48	+5.0
3,323,988	-		SO3185	0.48	+5.9
3,323,988	-		SO3185	0.48	+5.8
3,323,988	-		SO3185	0.48	+6.6
3,323,988	-		SO3185	0.48	+4.9
3,323,988	-		SO3185	0.48	+6.0
3,323,988	-		SO3185	0.48	+6.4
3,323,988	-		SO3185	0.48	+5.7
3,324,024	-		SO3185	0.51	+7.3
3,324,048	-		SO3185	0.54	+6.9
3,324,094	-		SO3185	0.58	+5.9
3,324,096	-		SO3185	0.58	+6.7
3,324,154	+		SO3185	0.64	+5.8
3,324,155	+		SO3185	0.64	+6.8
3,324,155	+		SO3185	0.64	+5.7
3,324,162	-		SO3185	0.64	+5.9
3,324,164	+		SO3185	0.64	+6.2
3,324,170	-		SO3185	0.65	+5.0
3,324,170	-		SO3185	0.65	+6.3
3,324,172	-		SO3185	0.65	+6.5
3,324,172	-		SO3185	0.65	+4.3
3,324,179	-		SO3185	0.66	+5.9
3,324,188	-		SO3185	0.67	+4.8
3,324,189	-		SO3185	0.67	+5.4
3,324,219	+				+7.5
3,324,227	-		SO3185	0.70	+5.8
3,324,227	-		SO3185	0.70	+6.3
3,324,237	+		SO3185	0.71	+4.8
3,324,244	+		SO3185	0.72	+5.5
3,324,244	+		SO3185	0.72	+5.9
3,324,244	-		SO3185	0.72	+6.1
3,324,244	-		SO3185	0.72	+6.7
3,324,252	-		SO3185	0.73	+5.7
3,324,252	-		SO3185	0.73	+6.5
3,324,252	-		SO3185	0.73	+5.9
3,324,267	+		SO3185	0.74	+5.7
3,324,268	+		SO3185	0.74	+6.4
3,324,274	-		SO3185	0.75	+6.2
3,324,275	-		SO3185	0.75	+5.4
3,324,275	-		SO3185	0.75	+5.4
3,324,276	-		SO3185	0.75	+5.2
3,324,279	+		SO3185	0.75	+6.5
3,324,291	+		SO3185	0.76	+7.9
3,324,316	-		SO3185	0.79	+4.1
3,324,341	-		SO3185	0.81	+5.4
3,324,346	-		SO3185	0.81	+6.1
3,324,356	-		SO3185	0.82	+5.1
3,324,383	-		SO3185	0.85	+5.5
3,324,391	-		SO3185	0.86	+6.2
3,324,408	-		SO3185	0.87	+7.0
3,324,413	-		SO3185	0.88	-0.1
3,324,415	-		SO3185	0.88	+4.9
3,324,415	-		SO3185	0.88	+4.9
3,324,415	-		SO3185	0.88	+6.0
3,324,415	-		SO3185	0.88	+5.7
3,324,415	-		SO3185	0.88	+6.2
3,324,415	-		SO3185	0.88	+6.5
3,324,415	-		SO3185	0.88	+5.3
3,324,415	-		SO3185	0.88	+5.4
3,324,415	-		SO3185	0.88	+4.8
3,324,439	+				+4.9
3,324,439	+				+6.0
3,324,443	-				+4.8
3,324,447	-				+5.8
3,324,447	-				+5.9
3,324,463	+				+5.1
3,324,468	+				+5.9
3,324,471	-				+5.5
3,324,471	-				+5.6
3,324,486	+				+6.7
3,324,486	+				+6.3
3,324,486	+				+6.0
3,324,493	-				+6.0
3,324,494	-				+6.6
3,324,494	-				+5.2
3,324,494	-				+6.0
3,324,497	-				+6.5
3,324,497	-				+6.7
3,324,640	+	rfbA	SO3186	0.11	+3.9
3,324,673	+	rfbA	SO3186	0.14	+1.9
3,324,718	+	rfbA	SO3186	0.19	+1.7
3,324,718	+	rfbA	SO3186	0.19	+2.8
3,324,718	+	rfbA	SO3186	0.19	+2.0
3,324,726	-	rfbA	SO3186	0.20	+0.2
3,324,726	-	rfbA	SO3186	0.20	+0.9
3,324,726	-	rfbA	SO3186	0.20	-0.4
3,324,726	-	rfbA	SO3186	0.20	-2.0
3,324,745	+	rfbA	SO3186	0.22	+2.2
3,324,753	-	rfbA	SO3186	0.23	-1.3
3,324,753	-	rfbA	SO3186	0.23	+2.1
3,324,812	+	rfbA	SO3186	0.29	+1.3
3,324,820	-	rfbA	SO3186	0.30	-0.5
3,324,849	+	rfbA	SO3186	0.33	+1.6
3,324,894	+	rfbA	SO3186	0.38	+1.6
3,325,000	+	rfbA	SO3186	0.50	+2.2
3,325,008	-	rfbA	SO3186	0.51	+0.4
3,325,014	+	rfbA	SO3186	0.51	+1.4
3,325,022	-	rfbA	SO3186	0.52	+1.7
3,325,022	-	rfbA	SO3186	0.52	+0.9
3,325,030	-	rfbA	SO3186	0.53	-2.6
3,325,040	-	rfbA	SO3186	0.54	+0.3
3,325,108	-	rfbA	SO3186	0.62	-0.9
3,325,139	-	rfbA	SO3186	0.65	+2.2
3,325,169	-	rfbA	SO3186	0.68	-0.6
3,325,169	-	rfbA	SO3186	0.68	-0.5
3,325,173	+	rfbA	SO3186	0.69	+2.1
3,325,173	+	rfbA	SO3186	0.69	+2.2
3,325,173	+	rfbA	SO3186	0.69	+2.2
3,325,191	-	rfbA	SO3186	0.71	+0.9
3,325,191	-	rfbA	SO3186	0.71	+0.1
3,325,248	-	rfbA	SO3186	0.77	+1.5
3,325,290	+	rfbA	SO3186	0.82	+2.8
3,325,298	-	rfbA	SO3186	0.83	+0.8
3,325,298	-	rfbA	SO3186	0.83	+0.4
3,325,334	-	rfbA	SO3186	0.86	+1.9
3,325,336	+	rfbA	SO3186	0.87	+1.9
3,325,344	-	rfbA	SO3186	0.88	+1.6
3,325,400	+				+2.6
3,325,444	-				-1.9
3,325,445	-				+2.3
3,325,478	+				+1.9
3,325,486	-				+2.4
3,325,540	+				+3.8