Strain Fitness in Shewanella oneidensis MR-1 around SO3055

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
3,166,557	-				-1.9
3,166,573	+				+2.7
3,166,584	+				-0.7
3,166,606	+				-1.0
3,166,674	+		SO3054	0.17	+0.3
3,166,674	+		SO3054	0.17	+1.8
3,166,674	+		SO3054	0.17	+0.7
3,166,674	+		SO3054	0.17	-2.3
3,166,682	-		SO3054	0.18	-0.7
3,166,742	-		SO3054	0.28	-1.7
3,166,781	-		SO3054	0.34	+0.2
3,166,840	+		SO3054	0.43	-1.6
3,167,253	+				-0.2
3,167,375	-				+0.4
3,167,375	-				-1.0
3,167,521	+				-1.3
3,167,552	+	pip	SO3055	0.12	-0.8
3,167,559	-	pip	SO3055	0.13	-0.5
3,167,559	-	pip	SO3055	0.13	-4.3
3,167,559	-	pip	SO3055	0.13	+0.9
3,167,770	+	pip	SO3055	0.29	+1.2
3,167,772	+	pip	SO3055	0.29	-0.1
3,167,772	+	pip	SO3055	0.29	+1.1
3,167,808	+	pip	SO3055	0.32	-2.0
3,167,863	+	pip	SO3055	0.36	+0.8
3,167,865	-	pip	SO3055	0.37	-0.4
3,167,869	+	pip	SO3055	0.37	+0.1
3,167,914	-	pip	SO3055	0.40	-0.3
3,167,924	-	pip	SO3055	0.41	+0.2
3,167,989	-	pip	SO3055	0.46	+0.0
3,168,015	-	pip	SO3055	0.48	-0.9
3,168,051	+	pip	SO3055	0.51	+0.2
3,168,059	-	pip	SO3055	0.52	-0.9
3,168,100	+	pip	SO3055	0.55	-0.1
3,168,456	+	pip	SO3055	0.83	-2.5
3,168,506	-	pip	SO3055	0.87	-2.9
3,168,647	-				-0.6
3,168,837	+				-2.7
3,168,960	+		SO3056	0.18	-2.9
3,168,982	-		SO3056	0.23	-0.3
3,168,984	+		SO3056	0.24	-0.9
3,168,992	+		SO3056	0.26	-0.2
3,169,234	-		SO3056	0.89	+1.4
3,169,236	+		SO3056	0.90	-1.2
3,169,405	+				-2.6
3,169,405	+				+0.7
3,169,405	+				-1.3
3,169,405	+				-1.3
3,169,405	+				+0.4
3,169,405	+				-1.5
3,169,413	-				+1.1
3,169,413	-				+1.7
3,169,443	-				-1.6
3,169,493	-		SO3057	0.11	-0.5
3,169,518	-		SO3057	0.13	-1.1
3,169,552	+		SO3057	0.15	+0.0