Strain Fitness in Shewanella oneidensis MR-1 around SO2984

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2981 and SO2982 overlap by 10 nucleotidesSO2982 and SO2983 overlap by 4 nucleotidesSO2983 and SO2984 overlap by 17 nucleotidesSO2984 and O overlap by 29 nucleotides SO2981: SO2981 - hypothetical protein (NCBI ptt file), at 3,109,165 to 3,109,749 SO2981 SO2982: SO2982 - hypothetical protein (NCBI ptt file), at 3,109,740 to 3,110,255 SO2982 SO2983: SO2983 - hypothetical protein (NCBI ptt file), at 3,110,252 to 3,110,644 SO2983 SO2984: SO2984 - conserved hypothetical protein (NCBI ptt file), at 3,110,628 to 3,111,188 SO2984 SO2985: O - prophage LambdaSo, replication protein O (NCBI ptt file), at 3,111,160 to 3,112,176 O Position (kb) 3110 3111 3112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3109.669 kb on + strand, within SO2981at 3109.702 kb on - strandat 3109.750 kb on + strandat 3109.808 kb on + strand, within SO2982at 3109.808 kb on + strand, within SO2982at 3109.843 kb on + strand, within SO2982at 3109.910 kb on - strand, within SO2982at 3109.910 kb on - strand, within SO2982at 3109.949 kb on - strand, within SO2982at 3109.950 kb on - strand, within SO2982at 3109.961 kb on + strand, within SO2982at 3110.003 kb on + strand, within SO2982at 3110.045 kb on - strand, within SO2982at 3110.098 kb on + strand, within SO2982at 3110.103 kb on + strand, within SO2982at 3110.113 kb on + strand, within SO2982at 3110.113 kb on + strand, within SO2982at 3110.113 kb on + strand, within SO2982at 3110.113 kb on + strand, within SO2982at 3110.116 kb on - strand, within SO2982at 3110.121 kb on - strand, within SO2982at 3110.121 kb on - strand, within SO2982at 3110.121 kb on - strand, within SO2982at 3110.121 kb on - strand, within SO2982at 3110.121 kb on - strand, within SO2982at 3110.141 kb on + strand, within SO2982at 3110.168 kb on - strand, within SO2982at 3110.173 kb on + strand, within SO2982at 3110.173 kb on + strand, within SO2982at 3110.181 kb on - strand, within SO2982at 3110.216 kb on - strandat 3110.273 kb on - strandat 3110.273 kb on - strandat 3110.332 kb on + strand, within SO2983at 3110.340 kb on - strand, within SO2983at 3110.387 kb on - strand, within SO2983at 3110.468 kb on + strand, within SO2983at 3110.475 kb on + strand, within SO2983at 3110.483 kb on - strand, within SO2983at 3110.574 kb on + strand, within SO2983at 3110.859 kb on - strand, within SO2984at 3110.882 kb on - strand, within SO2984at 3110.961 kb on - strand, within SO2984at 3110.972 kb on - strand, within SO2984at 3110.983 kb on + strand, within SO2984at 3110.983 kb on + strand, within SO2984at 3110.985 kb on - strand, within SO2984at 3111.242 kb on - strandat 3111.274 kb on + strand, within Oat 3111.285 kb on + strand, within Oat 3111.401 kb on - strand, within Oat 3111.478 kb on + strand, within Oat 3111.487 kb on + strand, within Oat 3111.509 kb on - strand, within Oat 3111.598 kb on - strand, within Oat 3111.598 kb on - strand, within Oat 3111.629 kb on + strand, within Oat 3111.979 kb on - strand, within Oat 3112.047 kb on + strand, within Oat 3112.118 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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3,109,669 + SO2981 0.86 +0.2
3,109,702 - +0.5
3,109,750 + -1.4
3,109,808 + SO2982 0.13 +0.5
3,109,808 + SO2982 0.13 +0.7
3,109,843 + SO2982 0.20 -0.5
3,109,910 - SO2982 0.33 -3.5
3,109,910 - SO2982 0.33 +0.5
3,109,949 - SO2982 0.41 +0.5
3,109,950 - SO2982 0.41 -1.2
3,109,961 + SO2982 0.43 +1.8
3,110,003 + SO2982 0.51 -2.0
3,110,045 - SO2982 0.59 -1.7
3,110,098 + SO2982 0.69 -0.2
3,110,103 + SO2982 0.70 +0.8
3,110,113 + SO2982 0.72 -0.4
3,110,113 + SO2982 0.72 +0.5
3,110,113 + SO2982 0.72 +0.9
3,110,113 + SO2982 0.72 +0.1
3,110,116 - SO2982 0.73 +2.2
3,110,121 - SO2982 0.74 +0.5
3,110,121 - SO2982 0.74 +0.1
3,110,121 - SO2982 0.74 -0.1
3,110,121 - SO2982 0.74 -2.5
3,110,121 - SO2982 0.74 +1.0
3,110,141 + SO2982 0.78 +1.9
3,110,168 - SO2982 0.83 +0.5
3,110,173 + SO2982 0.84 -0.5
3,110,173 + SO2982 0.84 +1.9
3,110,181 - SO2982 0.85 +2.4
3,110,216 - -0.2
3,110,273 - -0.7
3,110,273 - -2.2
3,110,332 + SO2983 0.20 -1.7
3,110,340 - SO2983 0.22 +0.3
3,110,387 - SO2983 0.34 -1.1
3,110,468 + SO2983 0.55 -0.6
3,110,475 + SO2983 0.57 -0.2
3,110,483 - SO2983 0.59 -3.5
3,110,574 + SO2983 0.82 -1.2
3,110,859 - SO2984 0.41 -0.2
3,110,882 - SO2984 0.45 -1.2
3,110,961 - SO2984 0.59 -3.0
3,110,972 - SO2984 0.61 -0.5
3,110,983 + SO2984 0.63 +0.2
3,110,983 + SO2984 0.63 +1.7
3,110,985 - SO2984 0.64 -0.6
3,111,242 - -3.3
3,111,274 + O SO2985 0.11 -0.1
3,111,285 + O SO2985 0.12 -1.2
3,111,401 - O SO2985 0.24 -1.9
3,111,478 + O SO2985 0.31 +1.2
3,111,487 + O SO2985 0.32 -0.8
3,111,509 - O SO2985 0.34 -2.4
3,111,598 - O SO2985 0.43 +0.1
3,111,598 - O SO2985 0.43 +0.3
3,111,629 + O SO2985 0.46 -0.8
3,111,979 - O SO2985 0.81 +0.8
3,112,047 + O SO2985 0.87 -0.4
3,112,118 + -0.0

Or see this region's nucleotide sequence