Strain Fitness in Shewanella oneidensis MR-1 around SO2949

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
3,085,791	-				+1.1
3,085,918	-		SO2948	0.10	-2.6
3,085,920	-		SO2948	0.10	-0.3
3,085,979	-		SO2948	0.19	-0.3
3,086,080	+		SO2948	0.33	+0.1
3,086,192	+		SO2948	0.48	-1.1
3,086,209	+		SO2948	0.51	-1.1
3,086,219	+		SO2948	0.52	-1.3
3,086,227	-		SO2948	0.53	-0.2
3,086,292	-		SO2948	0.62	-0.0
3,086,372	+		SO2948	0.74	-1.1
3,086,615	+				+0.6
3,086,638	-				-1.3
3,086,647	+				-0.5
3,086,706	+		SO2949	0.13	-1.1
3,086,709	-		SO2949	0.13	-1.7
3,086,715	-		SO2949	0.14	+0.6
3,086,720	-		SO2949	0.15	+0.7
3,086,810	-		SO2949	0.27	+1.3
3,086,876	-		SO2949	0.37	+1.4
3,086,893	-		SO2949	0.39	+0.3
3,087,008	+		SO2949	0.55	+0.2
3,087,019	+		SO2949	0.56	-0.4
3,087,128	-		SO2949	0.71	-0.0
3,087,128	-		SO2949	0.71	-0.8
3,087,138	+		SO2949	0.73	-0.1
3,087,149	+		SO2949	0.74	+0.9
3,087,162	-		SO2949	0.76	-1.0
3,087,306	+				+2.3
3,087,306	+				-1.4
3,087,306	+				+1.4
3,087,306	+				+0.1
3,087,306	+				+0.4
3,087,314	-				+0.1
3,087,314	-				+0.9
3,087,376	+				-0.3
3,087,376	+				+0.4
3,087,383	+				+1.0
3,087,384	-				-0.4
3,087,384	-				+0.1
3,087,384	-				-0.2
3,087,384	-				+0.1
3,087,477	-		SO2950	0.22	-2.1
3,087,477	-		SO2950	0.22	+1.0
3,087,590	+		SO2950	0.40	-0.4
3,087,674	-		SO2950	0.52	-0.4
3,087,674	-		SO2950	0.52	-0.5
3,087,674	-		SO2950	0.52	-1.3
3,087,674	-		SO2950	0.52	+0.0
3,087,689	-		SO2950	0.55	+0.1
3,087,765	+		SO2950	0.66	+0.4
3,087,771	+		SO2950	0.67	-0.9
3,087,883	+		SO2950	0.84	-1.5
3,087,891	-		SO2950	0.85	-0.9
3,087,895	+		SO2950	0.86	+2.5
3,087,895	-		SO2950	0.86	+0.2
3,087,903	+		SO2950	0.87	-0.9
3,087,910	+		SO2950	0.88	-1.4
3,087,911	-		SO2950	0.88	+0.1
3,087,950	+				-1.0
3,088,064	-				+0.8
3,088,166	-				+0.2
3,088,173	+				+0.7
3,088,181	-				-3.0
3,088,190	-				-0.5
3,088,200	+				-0.4
3,088,244	-		SO2951	0.12	-0.5
3,088,251	+		SO2951	0.12	+0.7
3,088,251	+		SO2951	0.12	-1.4
3,088,279	+		SO2951	0.14	-0.9