Strain Fitness in Shewanella oneidensis MR-1 around SO2879

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
2,999,281	+				+3.1
2,999,378	-				+1.5
2,999,388	+				+0.0
2,999,388	+				+1.9
2,999,411	+				+1.1
2,999,411	+				+0.8
2,999,411	+				-1.6
2,999,419	-				-2.3
2,999,436	+				+0.5
2,999,444	-				-2.4
2,999,567	-				+0.6
2,999,648	+				+1.3
2,999,667	+	uraA	SO2879	0.10	+2.1
2,999,907	+	uraA	SO2879	0.30	+0.6
2,999,921	-	uraA	SO2879	0.31	-2.3
2,999,945	+	uraA	SO2879	0.33	-1.6
2,999,953	-	uraA	SO2879	0.33	+0.8
2,999,973	-	uraA	SO2879	0.35	-0.9
2,999,973	-	uraA	SO2879	0.35	+1.1
2,999,984	-	uraA	SO2879	0.36	+1.9
2,999,984	-	uraA	SO2879	0.36	-0.6
3,000,056	+	uraA	SO2879	0.42	+2.3
3,000,227	+	uraA	SO2879	0.55	+2.1
3,000,235	-	uraA	SO2879	0.56	+0.9
3,000,462	+	uraA	SO2879	0.74	-0.7
3,000,564	+	uraA	SO2879	0.83	+1.1
3,000,633	+	uraA	SO2879	0.88	+1.9
3,000,639	+	uraA	SO2879	0.89	+0.1
3,000,641	-	uraA	SO2879	0.89	+0.3
3,000,676	+				+1.4
3,000,699	-				+0.8
3,000,716	-				-0.4
3,000,809	-				-0.5
3,000,861	+				-0.1
3,000,861	+				+1.4
3,000,932	+				+2.5
3,001,188	-		SO2880	0.83	-2.0
3,001,228	-				-0.7
3,001,295	+				+1.4
3,001,329	+				-1.8
3,001,329	+				+0.4
3,001,417	-				+0.3
3,001,417	-				+1.8