Strain Fitness in Shewanella oneidensis MR-1 around SO2791

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
2,913,025	+	sbcB	SO2790	0.59	+0.2
2,913,051	+	sbcB	SO2790	0.60	+0.0
2,913,059	-	sbcB	SO2790	0.61	-0.6
2,913,160	+	sbcB	SO2790	0.68	-3.4
2,913,210	-	sbcB	SO2790	0.72	+0.6
2,913,493	+				-2.2
2,913,596	-				-1.0
2,913,612	+				+0.5
2,913,630	-				+0.6
2,913,814	-				-0.1
2,913,934	-	cdd	SO2791	0.17	+1.0
2,913,934	-	cdd	SO2791	0.17	-3.0
2,914,046	+	cdd	SO2791	0.29	+0.9
2,914,066	+	cdd	SO2791	0.32	+0.6
2,914,074	-	cdd	SO2791	0.33	-1.1
2,914,124	-	cdd	SO2791	0.38	-1.5
2,914,202	+	cdd	SO2791	0.47	-1.7
2,914,266	-	cdd	SO2791	0.54	-0.1
2,914,285	+	cdd	SO2791	0.56	+0.4
2,914,349	+	cdd	SO2791	0.63	-0.1
2,914,389	-	cdd	SO2791	0.68	+0.7
2,914,389	-	cdd	SO2791	0.68	-0.1
2,914,389	-	cdd	SO2791	0.68	-2.6
2,914,389	-	cdd	SO2791	0.68	+0.2
2,914,389	-	cdd	SO2791	0.68	+0.3
2,914,402	+	cdd	SO2791	0.69	-1.1
2,914,402	+	cdd	SO2791	0.69	-2.1
2,914,410	-	cdd	SO2791	0.70	-1.2
2,914,410	-	cdd	SO2791	0.70	+0.6
2,914,417	-	cdd	SO2791	0.71	-2.8
2,914,572	-	cdd	SO2791	0.88	-0.7
2,914,593	-				+0.1
2,914,739	-				+2.3
2,914,877	-				+0.3
2,914,936	+		SO2792	0.37	-1.4
2,914,939	+		SO2792	0.38	-0.3
2,915,005	+		SO2792	0.69	+0.7
2,915,025	+		SO2792	0.78	+1.2
2,915,038	-		SO2792	0.84	+1.3
2,915,051	-				+2.0
2,915,053	+				+0.1
2,915,056	-				+0.1
2,915,187	+		SO2793	0.41	+0.2
2,915,285	-		SO2793	0.69	+0.6
2,915,320	+		SO2793	0.79	-0.0
2,915,328	-		SO2793	0.81	+1.1
2,915,397	-				+0.9
2,915,464	-				+0.7
2,915,506	-				+1.6
2,915,562	+		SO2794	0.13	+0.6
2,915,562	+		SO2794	0.13	-0.8
2,915,570	-		SO2794	0.14	+0.6
2,915,663	+		SO2794	0.27	-2.4