Strain Fitness in Shewanella oneidensis MR-1 around SO2582

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
2,708,824	+	fadD-1	SO2581	0.56	-2.8
2,708,868	+	fadD-1	SO2581	0.59	-1.8
2,708,876	-	fadD-1	SO2581	0.59	+0.5
2,709,065	+	fadD-1	SO2581	0.70	-0.1
2,709,151	+	fadD-1	SO2581	0.76	-0.3
2,709,249	+	fadD-1	SO2581	0.81	-0.3
2,709,250	+	fadD-1	SO2581	0.81	-0.1
2,709,294	+	fadD-1	SO2581	0.84	-0.8
2,709,302	-	fadD-1	SO2581	0.85	+1.5
2,709,339	+	fadD-1	SO2581	0.87	-2.0
2,709,431	-				-0.1
2,709,461	-				-0.1
2,709,497	-				-2.0
2,709,606	-				-2.3
2,709,656	-				-0.2
2,709,866	+		SO2582	0.13	-2.3
2,709,874	-		SO2582	0.13	+0.2
2,709,874	-		SO2582	0.13	-2.8
2,709,874	-		SO2582	0.13	-0.2
2,709,960	+		SO2582	0.23	-2.9
2,709,967	+		SO2582	0.24	-0.6
2,709,968	-		SO2582	0.24	-1.1
2,709,968	-		SO2582	0.24	+0.2
2,710,107	-		SO2582	0.40	+0.1
2,710,138	-		SO2582	0.44	+0.4
2,710,138	-		SO2582	0.44	-1.7
2,710,214	+		SO2582	0.53	+0.7
2,710,236	-		SO2582	0.55	-1.6
2,710,723	+				+0.8
2,710,763	+		SO2583	0.15	+0.3
2,710,765	-		SO2583	0.15	-0.3
2,710,765	-		SO2583	0.15	-0.4
2,710,771	-		SO2583	0.15	+0.6
2,710,900	+		SO2583	0.31	-0.7
2,710,938	+		SO2583	0.36	+1.3
2,710,938	+		SO2583	0.36	-1.9
2,711,165	+		SO2583	0.64	-1.7
2,711,173	-		SO2583	0.65	+1.4
2,711,205	-		SO2583	0.69	+0.4
2,711,324	-		SO2583	0.84	+0.5
2,711,398	+				-2.4
2,711,398	+				+0.1
2,711,398	+				+0.9
2,711,398	+				-1.6
2,711,398	+				+0.7
2,711,398	+				-0.5
2,711,398	+				+0.8
2,711,398	+				+3.0
2,711,406	-				-2.5
2,711,406	-				+0.9
2,711,481	+				-0.7
2,711,483	-				+0.6
2,711,536	+				-2.6
2,711,593	+				-3.5