Strain Fitness in Shewanella oneidensis MR-1 around SO2564

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2563 and SO2564 are separated by 250 nucleotidesSO2564 and SO2565 are separated by 367 nucleotides SO2563: SO2563 - metallo-beta-lactamase family protein (NCBI ptt file), at 2,692,498 to 2,693,301 SO2563 SO2564: SO2564 - transglycosylase, Slt family (NCBI ptt file), at 2,693,552 to 2,695,099 SO2564 SO2565: SO2565 - intracellular proteinase inhibitor domain protein (NCBI ptt file), at 2,695,467 to 2,696,114 SO2565 Position (kb) 2693 2694 2695 2696Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2692.579 kb on - strand, within SO2563at 2692.662 kb on + strand, within SO2563at 2692.664 kb on + strand, within SO2563at 2692.665 kb on + strand, within SO2563at 2692.723 kb on + strand, within SO2563at 2692.837 kb on - strand, within SO2563at 2692.853 kb on - strand, within SO2563at 2692.965 kb on - strand, within SO2563at 2692.981 kb on - strand, within SO2563at 2693.010 kb on + strand, within SO2563at 2693.082 kb on + strand, within SO2563at 2693.198 kb on + strand, within SO2563at 2693.210 kb on + strand, within SO2563at 2693.210 kb on + strand, within SO2563at 2693.210 kb on + strand, within SO2563at 2693.210 kb on + strand, within SO2563at 2693.246 kb on + strandat 2693.273 kb on + strandat 2693.593 kb on + strandat 2693.593 kb on + strandat 2693.593 kb on + strandat 2693.601 kb on - strandat 2693.601 kb on - strandat 2693.657 kb on - strandat 2693.813 kb on - strand, within SO2564at 2693.843 kb on + strand, within SO2564at 2693.982 kb on + strand, within SO2564at 2693.992 kb on - strand, within SO2564at 2694.063 kb on + strand, within SO2564at 2694.414 kb on - strand, within SO2564at 2694.414 kb on - strand, within SO2564at 2694.432 kb on - strand, within SO2564at 2694.456 kb on + strand, within SO2564at 2694.691 kb on + strand, within SO2564at 2694.691 kb on + strand, within SO2564at 2694.800 kb on + strand, within SO2564at 2694.925 kb on + strand, within SO2564at 2694.947 kb on + strandat 2695.021 kb on - strandat 2695.023 kb on + strandat 2695.024 kb on + strandat 2695.031 kb on - strandat 2695.168 kb on + strandat 2695.251 kb on + strandat 2695.373 kb on + strandat 2695.444 kb on - strandat 2695.484 kb on + strandat 2695.634 kb on - strand, within SO2565at 2695.697 kb on + strand, within SO2565at 2695.705 kb on - strand, within SO2565at 2695.842 kb on - strand, within SO2565at 2695.911 kb on - strand, within SO2565at 2695.988 kb on - strand, within SO2565at 2696.036 kb on + strand, within SO2565

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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2,692,579 - SO2563 0.10 +0.1
2,692,662 + SO2563 0.20 -2.3
2,692,664 + SO2563 0.21 -1.6
2,692,665 + SO2563 0.21 -1.8
2,692,723 + SO2563 0.28 -1.6
2,692,837 - SO2563 0.42 +0.5
2,692,853 - SO2563 0.44 +1.0
2,692,965 - SO2563 0.58 +0.7
2,692,981 - SO2563 0.60 -3.1
2,693,010 + SO2563 0.64 +0.0
2,693,082 + SO2563 0.73 -2.9
2,693,198 + SO2563 0.87 -2.5
2,693,210 + SO2563 0.89 +1.2
2,693,210 + SO2563 0.89 +0.0
2,693,210 + SO2563 0.89 -1.9
2,693,210 + SO2563 0.89 -0.5
2,693,246 + -0.9
2,693,273 + -2.5
2,693,593 + -3.4
2,693,593 + -2.9
2,693,593 + -1.8
2,693,601 - -2.2
2,693,601 - -1.6
2,693,657 - -1.8
2,693,813 - SO2564 0.17 -4.6
2,693,843 + SO2564 0.19 -3.5
2,693,982 + SO2564 0.28 -1.4
2,693,992 - SO2564 0.28 -2.4
2,694,063 + SO2564 0.33 -2.3
2,694,414 - SO2564 0.56 -3.6
2,694,414 - SO2564 0.56 -0.6
2,694,432 - SO2564 0.57 -1.2
2,694,456 + SO2564 0.58 -2.4
2,694,691 + SO2564 0.74 -1.1
2,694,691 + SO2564 0.74 -2.2
2,694,800 + SO2564 0.81 -0.9
2,694,925 + SO2564 0.89 +3.1
2,694,947 + -1.8
2,695,021 - -1.4
2,695,023 + -2.2
2,695,024 + -1.2
2,695,031 - -3.2
2,695,168 + -2.4
2,695,251 + -0.0
2,695,373 + -2.2
2,695,444 - +1.2
2,695,484 + +0.8
2,695,634 - SO2565 0.26 -0.5
2,695,697 + SO2565 0.35 -1.1
2,695,705 - SO2565 0.37 -0.2
2,695,842 - SO2565 0.58 -0.7
2,695,911 - SO2565 0.69 -1.9
2,695,988 - SO2565 0.80 +0.8
2,696,036 + SO2565 0.88 -2.5

Or see this region's nucleotide sequence