Strain Fitness in Shewanella oneidensis MR-1 around SO2176
Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Carbenicillin 0.008 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,287,218 | + | SO2175 | 0.59 | -1.3 | |
| 2,287,247 | + | SO2175 | 0.60 | -2.3 | |
| 2,287,317 | + | SO2175 | 0.64 | -1.1 | |
| 2,288,084 | - | SO2176 | 0.27 | +0.3 | |
| 2,288,099 | - | SO2176 | 0.34 | -1.0 | |
| 2,288,169 | - | SO2176 | 0.66 | -1.0 | |
| 2,288,563 | + | SO2177 | 0.24 | +0.5 | |
| 2,288,595 | + | SO2177 | 0.27 | -1.7 | |
| 2,288,838 | + | SO2177 | 0.50 | +0.1 | |
| 2,288,915 | + | SO2177 | 0.58 | -0.3 | |
| 2,288,917 | + | SO2177 | 0.58 | +1.8 | |
| 2,289,041 | - | SO2177 | 0.70 | -0.3 |
Or see this region's nucleotide sequence