Strain Fitness in Shewanella oneidensis MR-1 around SO2146

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
2,252,108	-				+0.7
2,252,330	-		SO2145	0.21	+0.6
2,252,410	+		SO2145	0.29	+1.0
2,252,410	+		SO2145	0.29	+0.5
2,252,418	-		SO2145	0.30	-2.6
2,252,521	+		SO2145	0.41	+0.1
2,252,521	+		SO2145	0.41	-0.0
2,252,529	-		SO2145	0.42	-2.7
2,252,529	-		SO2145	0.42	-0.3
2,252,529	-		SO2145	0.42	+0.6
2,252,739	+		SO2145	0.64	+0.8
2,252,779	-		SO2145	0.69	-0.8
2,252,783	+		SO2145	0.69	+0.5
2,252,793	+		SO2145	0.70	-0.5
2,252,861	+		SO2145	0.77	+0.2
2,252,866	+		SO2145	0.78	-2.5
2,252,869	-		SO2145	0.78	-0.9
2,252,869	-		SO2145	0.78	+0.4
2,252,869	-		SO2145	0.78	+0.2
2,252,869	-		SO2145	0.78	-2.1
2,252,897	+		SO2145	0.81	+0.8
2,252,897	+		SO2145	0.81	+0.5
2,253,033	+				+1.1
2,253,043	+				-1.3
2,253,118	+		SO2146	0.12	+1.2
2,253,126	-		SO2146	0.14	-2.9
2,253,348	+		SO2146	0.70	+0.2
2,253,383	+		SO2146	0.79	-1.3
2,253,394	+		SO2146	0.82	-0.4
2,253,422	+		SO2146	0.89	-2.2
2,253,448	-				-0.0
2,253,474	+				+0.2
2,253,474	+				+2.1
2,253,474	+				+0.3
2,253,482	-				-0.3
2,253,551	+				+0.5
2,254,280	-	recD	SO2147	0.36	-1.3