Strain Fitness in Shewanella oneidensis MR-1 around SO2126

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
2,230,555	+	cheR-1	SO2124	0.62	+0.9
2,230,558	-	cheR-1	SO2124	0.62	+0.6
2,230,560	+	cheR-1	SO2124	0.63	+0.9
2,230,564	+	cheR-1	SO2124	0.63	-0.5
2,230,568	-	cheR-1	SO2124	0.64	-0.9
2,230,576	+	cheR-1	SO2124	0.65	+2.1
2,230,577	+	cheR-1	SO2124	0.65	+0.1
2,230,634	+	cheR-1	SO2124	0.71	-1.0
2,230,642	-	cheR-1	SO2124	0.72	+1.0
2,230,760	-	cheR-1	SO2124	0.87	+0.3
2,230,762	-	cheR-1	SO2124	0.87	-1.2
2,230,801	+				-0.8
2,230,833	-				-1.0
2,231,150	+	cheD-1	SO2125	0.48	+1.0
2,231,173	-	cheD-1	SO2125	0.52	+1.3
2,231,178	-	cheD-1	SO2125	0.53	+0.5
2,231,488	+				+1.4
2,231,495	-				+1.7
2,231,593	+	cheB-1	SO2126	0.11	-0.6
2,231,606	-	cheB-1	SO2126	0.12	-1.2
2,231,606	-	cheB-1	SO2126	0.12	+0.3
2,231,751	-	cheB-1	SO2126	0.26	+0.1
2,231,772	-	cheB-1	SO2126	0.28	-2.2
2,231,787	+	cheB-1	SO2126	0.29	-0.8
2,231,793	+	cheB-1	SO2126	0.30	-2.4
2,231,797	+	cheB-1	SO2126	0.30	+1.1
2,231,800	-	cheB-1	SO2126	0.31	-0.8
2,231,807	+	cheB-1	SO2126	0.31	-0.6
2,231,877	+	cheB-1	SO2126	0.38	-1.2
2,231,877	+	cheB-1	SO2126	0.38	-3.0
2,231,897	+	cheB-1	SO2126	0.40	-1.5
2,231,929	+	cheB-1	SO2126	0.43	-1.0
2,231,945	+	cheB-1	SO2126	0.44	-1.3
2,232,013	+	cheB-1	SO2126	0.51	-0.3
2,232,073	+	cheB-1	SO2126	0.57	-1.7
2,232,119	-	cheB-1	SO2126	0.61	-0.6
2,232,163	-	cheB-1	SO2126	0.65	-0.7
2,232,184	-	cheB-1	SO2126	0.67	+1.1
2,232,203	-	cheB-1	SO2126	0.69	+0.7
2,232,257	+	cheB-1	SO2126	0.74	-1.4
2,232,403	+	cheB-1	SO2126	0.88	-1.5
2,232,403	+	cheB-1	SO2126	0.88	-1.3
2,232,634	+				+1.3
2,232,636	+				-0.9
2,232,652	-				-0.0
2,232,681	+				-0.8
2,232,681	+				-0.4
2,232,770	+		SO2127	0.13	+1.5
2,232,770	+		SO2127	0.13	+0.7
2,232,854	-		SO2127	0.18	-0.8
2,232,856	+		SO2127	0.18	+1.6
2,232,856	+		SO2127	0.18	-0.0
2,232,864	-		SO2127	0.18	-1.9
2,232,864	-		SO2127	0.18	-0.0
2,232,864	-		SO2127	0.18	+0.2
2,232,883	-		SO2127	0.20	+0.1
2,232,894	+		SO2127	0.20	-0.7
2,232,894	+		SO2127	0.20	+1.3
2,232,902	-		SO2127	0.21	+0.7
2,233,178	-		SO2127	0.38	-0.5
2,233,189	+		SO2127	0.38	+1.1
2,233,189	+		SO2127	0.38	-0.3
2,233,255	+		SO2127	0.42	-1.1
2,233,255	+		SO2127	0.42	+1.5
2,233,255	+		SO2127	0.42	-0.6
2,233,263	-		SO2127	0.43	-0.7
2,233,263	-		SO2127	0.43	+1.5
2,233,263	-		SO2127	0.43	-1.1
2,233,263	-		SO2127	0.43	-3.4
2,233,325	+		SO2127	0.47	-1.6
2,233,326	+		SO2127	0.47	-0.3
2,233,334	-		SO2127	0.47	-0.3
2,233,349	-		SO2127	0.48	-1.2
2,233,353	+		SO2127	0.48	+1.4
2,233,353	+		SO2127	0.48	-0.3
2,233,353	+		SO2127	0.48	-0.8
2,233,353	+		SO2127	0.48	+0.1
2,233,353	-		SO2127	0.48	+0.1
2,233,360	+		SO2127	0.49	-0.8
2,233,361	-		SO2127	0.49	+0.2
2,233,361	-		SO2127	0.49	+0.2
2,233,361	-		SO2127	0.49	+0.4
2,233,361	-		SO2127	0.49	+1.4
2,233,374	-		SO2127	0.50	-0.4
2,233,421	+		SO2127	0.52	-0.4
2,233,439	-		SO2127	0.54	+1.1
2,233,439	-		SO2127	0.54	-0.0
2,233,456	+		SO2127	0.55	-0.4