Strain Fitness in Shewanella oneidensis MR-1 around SO1971

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
2,074,504	-		SO1969	0.82	-0.5
2,074,655	+				-0.7
2,074,666	+				+1.7
2,074,680	+				+0.8
2,074,688	-				-0.4
2,074,688	-				-0.4
2,074,688	-				+1.0
2,074,688	-				-1.5
2,074,714	-				+0.5
2,074,724	-				+2.1
2,074,724	-				+2.3
2,074,767	-				-0.6
2,074,767	-				-2.2
2,074,899	-		SO1970	0.24	-0.9
2,074,948	+		SO1970	0.34	+0.2
2,075,009	+		SO1970	0.47	-0.3
2,075,009	+		SO1970	0.47	+0.3
2,075,017	-		SO1970	0.48	-0.5
2,075,095	+		SO1970	0.65	-0.8
2,075,098	-		SO1970	0.65	+1.8
2,075,103	-		SO1970	0.66	+0.5
2,075,114	+		SO1970	0.69	-0.2
2,075,134	+		SO1970	0.73	-1.2
2,075,157	-		SO1970	0.78	+1.1
2,075,204	-		SO1970	0.87	-1.6
2,075,260	-				-2.0
2,075,289	+				-0.8
2,075,310	-				+0.9
2,075,310	-				-3.0
2,075,358	-				+0.0
2,075,506	+				-3.5
2,075,514	-				+0.3
2,075,537	+				+0.7
2,075,537	+				+1.4
2,075,545	+				+2.0
2,075,696	+		SO1971	0.18	-1.1
2,075,741	+		SO1971	0.20	-0.1
2,075,788	+		SO1971	0.23	+0.3
2,075,803	+		SO1971	0.24	+0.3
2,075,806	+		SO1971	0.24	-0.5
2,076,003	+		SO1971	0.35	+0.2
2,076,301	-		SO1971	0.52	-1.5
2,076,301	-		SO1971	0.52	-0.2
2,076,328	+		SO1971	0.54	+1.6
2,076,337	+		SO1971	0.54	-0.7
2,076,345	-		SO1971	0.55	-2.0
2,076,442	+		SO1971	0.60	-0.2
2,076,452	+		SO1971	0.61	+0.7
2,076,452	+		SO1971	0.61	-1.5
2,076,460	-		SO1971	0.61	-0.3
2,076,557	-		SO1971	0.67	-2.6
2,076,629	+		SO1971	0.71	-2.4
2,076,671	-		SO1971	0.74	-0.4
2,076,678	+		SO1971	0.74	-0.1
2,076,861	+		SO1971	0.85	+0.8
2,076,892	+		SO1971	0.86	-0.1
2,076,892	+		SO1971	0.86	-1.9
2,076,896	-		SO1971	0.87	+1.7
2,076,900	-		SO1971	0.87	-2.4
2,076,902	+		SO1971	0.87	-0.3
2,076,910	-		SO1971	0.87	-0.5
2,076,944	+		SO1971	0.89	+0.0
2,076,944	+		SO1971	0.89	-1.0
2,076,944	+		SO1971	0.89	+0.5
2,076,981	+				-0.3
2,077,004	+				+1.5
2,077,004	+				+1.2
2,077,044	+				-0.2
2,077,097	+				+1.0
2,077,184	+				-1.7
2,077,184	+				-0.0
2,077,189	+				+1.8
2,077,189	+				-0.8
2,077,189	+				-2.1
2,077,192	-				-0.4
2,077,192	-				+0.9
2,077,192	-				+1.6
2,077,192	-				-0.7
2,077,202	-				+0.8
2,077,262	+				-0.5
2,077,268	-				+0.1
2,077,269	-				-0.5
2,077,270	-				+0.4
2,077,272	+				+0.6
2,077,277	+				+0.0
2,077,285	-				+1.5
2,077,308	+				+0.4
2,077,308	+				-0.1
2,077,308	+				-0.4
2,077,308	+				+1.1
2,077,308	+				+2.0
2,077,310	-				-0.0
2,077,316	-				+0.8
2,077,316	-				+1.9
2,077,316	-				+1.1
2,077,316	-				-1.5
2,077,316	-				+0.5
2,077,375	+				+0.9
2,077,375	+				-1.3
2,077,375	+				-1.1
2,077,383	-				+0.9
2,077,383	-				-0.6
2,077,383	-				+0.2
2,077,383	-				+0.7
2,077,456	+				-0.1
2,077,489	-				-2.3
2,077,489	-				-1.9
2,077,489	-				+0.7
2,077,494	+				-0.1
2,077,502	+				-0.7
2,077,502	+				-0.0
2,077,502	+				-0.7
2,077,510	-				-1.4
2,077,510	-				-0.7
2,077,510	-				-1.7
2,077,522	+				+0.5
2,077,522	+				-1.0
2,077,548	-				+1.0
2,077,580	-				-0.2
2,077,634	+				-0.3
2,077,645	+				-1.8
2,077,658	+				-2.3
2,077,666	-				+2.4
2,077,694	+				-0.9
2,077,694	+				-0.5
2,077,702	-				-0.5
2,077,751	-				+1.1
2,077,758	+				+0.2
2,077,758	+				+1.0
2,077,758	+				+0.9
2,077,766	-				+0.4
2,077,824	-		SO1973	0.18	-0.9
2,077,832	+		SO1973	0.19	-2.6
2,077,840	-		SO1973	0.20	+0.8
2,077,840	-		SO1973	0.20	-0.3
2,077,844	+		SO1973	0.20	+0.9
2,077,902	-		SO1973	0.29	-1.2
2,078,011	-		SO1973	0.44	+1.1
2,078,041	-		SO1973	0.48	-0.5
2,078,080	+		SO1973	0.54	+1.3
2,078,081	-		SO1973	0.54	+0.2
2,078,081	-		SO1973	0.54	-2.4
2,078,104	-		SO1973	0.57	+0.9