Strain Fitness in Shewanella oneidensis MR-1 around SO1656

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
1,742,566	+		SO1654	0.55	-1.0
1,742,566	+		SO1654	0.55	+1.7
1,742,566	+		SO1654	0.55	+0.2
1,742,566	+		SO1654	0.55	-0.2
1,742,566	+		SO1654	0.55	+0.7
1,743,129	-	cysQ-2	SO1655	0.51	+0.3
1,743,338	-	cysQ-2	SO1655	0.78	+2.8
1,743,422	+	cysQ-2	SO1655	0.89	+1.7
1,743,428	+				+1.6
1,743,430	-				+1.2
1,743,565	-				-2.2
1,743,640	+				-1.0
1,743,690	-		SO1656	0.14	+2.2
1,743,776	+		SO1656	0.23	-1.3
1,743,776	+		SO1656	0.23	-1.9
1,743,776	+		SO1656	0.23	-2.9
1,743,776	+		SO1656	0.23	-2.4
1,743,776	+		SO1656	0.23	+3.5
1,743,784	-		SO1656	0.24	-1.2
1,743,784	-		SO1656	0.24	-1.3
1,743,784	-		SO1656	0.24	-0.6
1,743,818	-		SO1656	0.27	+0.2
1,743,820	+		SO1656	0.28	+1.4
1,743,836	+		SO1656	0.29	-1.1
1,743,855	-		SO1656	0.31	-0.3
1,743,879	+		SO1656	0.34	-0.1
1,743,976	-		SO1656	0.45	-1.6
1,744,020	-		SO1656	0.49	-2.3
1,744,073	-		SO1656	0.55	-2.6
1,744,313	-		SO1656	0.81	+1.0
1,744,327	-		SO1656	0.83	-0.0
1,744,349	-		SO1656	0.85	-0.8
1,744,463	-				+1.3
1,744,473	-				+1.7
1,744,557	+				-0.2
1,744,557	+				-0.2
1,744,623	-				-1.3
1,744,790	-		SO1657	0.28	+1.0
1,744,794	+		SO1657	0.29	-1.7
1,744,802	-		SO1657	0.30	-1.8
1,744,925	-		SO1657	0.47	+0.9
1,745,006	-		SO1657	0.58	+2.1
1,745,024	-		SO1657	0.60	+0.4
1,745,359	+				+1.5
1,745,378	+				+2.2
1,745,378	+				-1.8
1,745,378	+				-1.5
1,745,386	-				-0.1
1,745,386	-				-1.0
1,745,386	-				-0.6
1,745,386	-				+1.7
1,745,386	-				-0.0
1,745,464	-		SO1658	0.20	+0.1
1,745,480	-		SO1658	0.22	+1.0