Strain Fitness in Shewanella oneidensis MR-1 around SO1275

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
1,323,116	+		SO1274	0.28	-0.7
1,323,116	+		SO1274	0.28	-3.0
1,323,275	+		SO1274	0.40	-1.2
1,323,311	-		SO1274	0.43	-0.4
1,323,377	+		SO1274	0.48	+0.8
1,323,424	+		SO1274	0.52	+1.4
1,323,590	-		SO1274	0.65	+0.9
1,323,738	+		SO1274	0.76	-0.1
1,323,738	+		SO1274	0.76	-1.8
1,323,746	-		SO1274	0.77	-0.4
1,323,746	-		SO1274	0.77	-2.1
1,323,956	-				+0.9
1,323,957	+				+1.4
1,323,967	+				+0.3
1,324,016	-				+0.7
1,324,165	+				+0.6
1,324,315	+	gabD	SO1275	0.15	-0.7
1,324,315	+	gabD	SO1275	0.15	+0.6
1,324,323	-	gabD	SO1275	0.16	-0.5
1,324,381	+	gabD	SO1275	0.20	-1.9
1,324,389	-	gabD	SO1275	0.20	-0.5
1,324,391	+	gabD	SO1275	0.20	-0.1
1,324,391	+	gabD	SO1275	0.20	-2.6
1,324,398	+	gabD	SO1275	0.21	+0.8
1,324,399	-	gabD	SO1275	0.21	+1.1
1,324,424	-	gabD	SO1275	0.22	+0.2
1,324,631	+	gabD	SO1275	0.37	-1.2
1,324,639	-	gabD	SO1275	0.37	-0.3
1,324,754	+	gabD	SO1275	0.45	-0.4
1,324,754	+	gabD	SO1275	0.45	+1.5
1,325,032	-	gabD	SO1275	0.64	-0.6
1,325,041	+	gabD	SO1275	0.65	+0.6
1,325,216	+	gabD	SO1275	0.77	+0.4
1,325,336	-	gabD	SO1275	0.85	+2.1
1,325,414	+				-3.0
1,325,422	-				-0.1
1,325,467	+				-0.4
1,325,467	+				-0.5
1,325,472	+				-0.8
1,325,480	-				-3.1
1,325,803	-	gabT	SO1276	0.15	+1.2
1,325,858	-	gabT	SO1276	0.19	+1.0
1,325,894	-	gabT	SO1276	0.22	+0.4
1,325,941	-	gabT	SO1276	0.26	-0.1
1,325,944	+	gabT	SO1276	0.26	-0.9
1,326,090	+	gabT	SO1276	0.38	+0.2
1,326,098	-	gabT	SO1276	0.38	+0.6
1,326,125	+	gabT	SO1276	0.40	-0.6
1,326,242	-	gabT	SO1276	0.49	+2.0
1,326,283	+	gabT	SO1276	0.53	+0.8
1,326,310	+	gabT	SO1276	0.55	+1.2
1,326,448	-	gabT	SO1276	0.66	+0.1