Strain Fitness in Shewanella oneidensis MR-1 around SO1274

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
1,321,769	-				-0.7
1,321,888	-		SO1273	0.23	-0.1
1,321,888	-		SO1273	0.23	+1.2
1,321,901	+		SO1273	0.24	-2.2
1,321,909	-		SO1273	0.25	+1.6
1,321,919	-		SO1273	0.26	-0.0
1,321,983	+		SO1273	0.34	+0.6
1,321,991	-		SO1273	0.35	+0.8
1,322,040	-		SO1273	0.41	+0.5
1,322,050	+		SO1273	0.43	+1.2
1,322,088	+		SO1273	0.47	-0.3
1,322,096	-		SO1273	0.48	+0.6
1,322,096	-		SO1273	0.48	+0.6
1,322,174	-		SO1273	0.58	+0.3
1,322,174	-		SO1273	0.58	-0.8
1,322,220	+		SO1273	0.63	+0.2
1,322,239	-		SO1273	0.66	-1.8
1,322,326	-		SO1273	0.76	-0.4
1,322,359	-		SO1273	0.80	+0.2
1,322,380	-		SO1273	0.83	-0.6
1,322,399	-		SO1273	0.85	+0.5
1,322,608	-				+0.8
1,322,708	-				-2.2
1,322,764	-				+1.9
1,322,810	-				-0.5
1,322,810	-				+2.2
1,323,045	-		SO1274	0.23	-1.5
1,323,116	+		SO1274	0.28	-0.7
1,323,116	+		SO1274	0.28	-3.0
1,323,275	+		SO1274	0.40	-1.2
1,323,311	-		SO1274	0.43	-0.4
1,323,377	+		SO1274	0.48	+0.8
1,323,424	+		SO1274	0.52	+1.4
1,323,590	-		SO1274	0.65	+0.9
1,323,738	+		SO1274	0.76	-0.1
1,323,738	+		SO1274	0.76	-1.8
1,323,746	-		SO1274	0.77	-0.4
1,323,746	-		SO1274	0.77	-2.1
1,323,956	-				+0.9
1,323,957	+				+1.4
1,323,967	+				+0.3
1,324,016	-				+0.7
1,324,165	+				+0.6
1,324,315	+	gabD	SO1275	0.15	-0.7
1,324,315	+	gabD	SO1275	0.15	+0.6
1,324,323	-	gabD	SO1275	0.16	-0.5
1,324,381	+	gabD	SO1275	0.20	-1.9
1,324,389	-	gabD	SO1275	0.20	-0.5
1,324,391	+	gabD	SO1275	0.20	-0.1
1,324,391	+	gabD	SO1275	0.20	-2.6
1,324,398	+	gabD	SO1275	0.21	+0.8
1,324,399	-	gabD	SO1275	0.21	+1.1
1,324,424	-	gabD	SO1275	0.22	+0.2
1,324,631	+	gabD	SO1275	0.37	-1.2
1,324,639	-	gabD	SO1275	0.37	-0.3
1,324,754	+	gabD	SO1275	0.45	-0.4
1,324,754	+	gabD	SO1275	0.45	+1.5
1,325,032	-	gabD	SO1275	0.64	-0.6
1,325,041	+	gabD	SO1275	0.65	+0.6