Strain Fitness in Shewanella oneidensis MR-1 around SO1239

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
1,289,483	-		SO1238	0.48	+0.1
1,289,637	-		SO1238	0.56	+1.4
1,289,713	-		SO1238	0.60	-0.9
1,289,719	+		SO1238	0.61	-0.9
1,289,719	+		SO1238	0.61	-2.1
1,289,719	+		SO1238	0.61	-0.6
1,289,719	+		SO1238	0.61	+0.2
1,289,725	+		SO1238	0.61	-1.8
1,289,727	-		SO1238	0.61	+0.8
1,289,843	+		SO1238	0.67	-0.1
1,289,944	+		SO1238	0.73	+0.2
1,289,946	+		SO1238	0.73	-1.0
1,289,952	-		SO1238	0.73	+0.4
1,289,999	+		SO1238	0.76	-1.4
1,290,080	-		SO1238	0.80	+0.7
1,290,212	-		SO1238	0.87	+2.2
1,290,212	-		SO1238	0.87	+0.9
1,290,266	+				-0.8
1,290,305	+				+1.1
1,290,381	-				+0.8
1,290,404	+				-0.3
1,290,465	+				-1.1
1,290,465	+				-1.5
1,290,534	-				+0.3
1,290,550	+				+1.5
1,290,550	+				+0.9
1,290,550	+				-1.5
1,290,550	+				+0.2
1,290,605	-		SO1239	0.14	+1.3
1,290,771	+		SO1239	0.30	-0.0
1,290,784	-		SO1239	0.31	+1.6
1,290,854	+		SO1239	0.38	-1.7
1,290,962	-		SO1239	0.48	+1.2
1,290,989	-		SO1239	0.50	-1.6
1,291,036	-		SO1239	0.55	-2.8
1,291,086	+		SO1239	0.60	+1.3
1,291,086	+		SO1239	0.60	+1.0
1,291,086	+		SO1239	0.60	+0.7
1,291,094	-		SO1239	0.60	+0.5
1,291,405	+		SO1239	0.90	-0.1
1,291,436	+				-0.1
1,291,458	+				+0.4
1,291,478	+				-1.8
1,291,484	+				+0.5
1,291,484	+				+0.1
1,291,484	+				+1.5
1,291,533	+				-3.0
1,291,543	+				-1.3
1,291,543	+				+0.6
1,291,543	+				+1.4
1,291,543	+				-0.2
1,291,551	-				-2.8
1,291,612	+				+0.6
1,291,617	-				+0.1
1,291,620	-				+1.5
1,291,716	+				+1.1
1,291,756	-				-0.6
1,291,796	+				+1.9
1,291,796	+				+0.0
1,291,889	+				+0.5