Strain Fitness in Shewanella oneidensis MR-1 around SO1065

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
1,103,199	-		SO1064	0.12	-0.6
1,103,263	-		SO1064	0.18	+0.5
1,103,411	+		SO1064	0.34	-1.3
1,103,433	-		SO1064	0.36	+0.9
1,103,435	+		SO1064	0.36	+0.6
1,103,437	+		SO1064	0.37	-2.8
1,103,443	-		SO1064	0.37	-0.1
1,103,443	-		SO1064	0.37	-0.2
1,103,499	+		SO1064	0.43	+0.3
1,103,529	+		SO1064	0.46	+1.2
1,103,529	+		SO1064	0.46	-0.9
1,103,549	-		SO1064	0.48	-0.2
1,103,627	+		SO1064	0.57	-0.1
1,103,627	+		SO1064	0.57	-0.3
1,103,650	-		SO1064	0.59	-2.8
1,103,662	+		SO1064	0.60	-0.6
1,103,709	+		SO1064	0.65	-3.8
1,103,748	-		SO1064	0.69	+0.4
1,103,818	+		SO1064	0.77	+0.2
1,103,818	+		SO1064	0.77	-0.5
1,103,818	+		SO1064	0.77	-1.8
1,103,818	+		SO1064	0.77	+0.4
1,103,826	-		SO1064	0.78	-0.1
1,103,868	+		SO1064	0.82	+0.2
1,103,884	+		SO1064	0.84	-2.6
1,103,884	+		SO1064	0.84	+0.2
1,103,884	+		SO1064	0.84	-0.0
1,103,884	+		SO1064	0.84	-2.2
1,103,884	+		SO1064	0.84	-0.5
1,103,884	+		SO1064	0.84	-2.6
1,103,884	+		SO1064	0.84	-3.2
1,103,884	+		SO1064	0.84	-0.2
1,103,884	+		SO1064	0.84	-0.0
1,103,892	-		SO1064	0.85	+0.5
1,103,892	-		SO1064	0.85	+0.2
1,103,892	-		SO1064	0.85	-0.5
1,103,892	-		SO1064	0.85	+0.3
1,103,892	-		SO1064	0.85	-1.0
1,103,892	-		SO1064	0.85	+0.3
1,103,902	-		SO1064	0.86	+1.1
1,103,931	-		SO1064	0.89	+1.9
1,103,977	+				+0.9
1,103,985	-				-2.0
1,104,111	+				+1.6
1,104,116	+				-0.9
1,104,124	-				-1.8
1,104,133	+				-1.2
1,104,134	+				-2.1
1,104,155	-				-0.9
1,104,239	-				-1.5
1,104,301	-	fkpA	SO1065	0.14	-1.4
1,104,311	+	fkpA	SO1065	0.15	-2.8
1,104,325	+	fkpA	SO1065	0.17	-0.7
1,104,328	-	fkpA	SO1065	0.18	-1.3
1,104,369	-	fkpA	SO1065	0.23	+0.2
1,104,378	+	fkpA	SO1065	0.24	+0.6
1,104,378	+	fkpA	SO1065	0.24	-0.9
1,104,379	+	fkpA	SO1065	0.24	+0.7
1,104,386	-	fkpA	SO1065	0.25	-2.3
1,104,386	-	fkpA	SO1065	0.25	+1.2
1,104,387	-	fkpA	SO1065	0.25	+0.3
1,104,522	+	fkpA	SO1065	0.43	-4.0
1,104,529	-	fkpA	SO1065	0.44	+0.2
1,104,596	+	fkpA	SO1065	0.53	-0.9
1,104,599	-	fkpA	SO1065	0.53	-2.5
1,104,650	+	fkpA	SO1065	0.60	-1.4
1,104,668	-	fkpA	SO1065	0.62	-2.0
1,104,730	+	fkpA	SO1065	0.70	-1.9
1,104,768	+	fkpA	SO1065	0.75	-2.7
1,104,776	-	fkpA	SO1065	0.76	-2.8
1,104,787	-	fkpA	SO1065	0.77	-2.6
1,104,821	-	fkpA	SO1065	0.82	-0.4
1,104,865	+	fkpA	SO1065	0.88	-2.2
1,104,870	+	fkpA	SO1065	0.88	-3.7
1,104,880	+	fkpA	SO1065	0.90	-0.6
1,104,888	-				-1.5
1,104,888	-				-3.0
1,104,945	-				-1.3
1,104,946	-				-0.1
1,104,964	-				-0.3
1,105,025	+				+0.2
1,105,035	-				-1.2
1,105,043	-				-0.1
1,105,047	+				+2.3
1,105,062	+				+0.2
1,105,062	+				+1.4
1,105,158	+				-3.2
1,105,164	+				+1.5
1,105,166	-				+1.1
1,105,172	-				+0.9
1,105,172	-				+0.6
1,105,172	-				-5.0
1,105,205	-				+0.3
1,105,290	-				-1.5
1,105,290	-				-1.5
1,105,296	+				-0.9
1,105,590	+				-1.5
1,105,603	-				+1.4
1,105,616	+				-0.8
1,105,616	+				+1.4
1,105,616	+				-0.4
1,105,616	+				-1.2
1,105,616	+				-1.1
1,105,616	+				-0.7
1,105,616	+				-0.9
1,105,624	-				+1.0
1,105,624	-				+0.7
1,105,624	-				+0.5
1,105,624	-				-1.0
1,105,659	-				-0.6
1,105,679	-				+0.3
1,105,686	+				+1.8
1,105,756	-				-0.7
1,105,756	-				+0.8
1,105,770	-				-1.9
1,105,786	+		SO1066	0.10	+1.0
1,105,806	-		SO1066	0.11	-1.5
1,105,810	+		SO1066	0.11	-1.9
1,105,810	+		SO1066	0.11	-2.4
1,105,810	+		SO1066	0.11	-0.2
1,105,817	+		SO1066	0.11	+2.4
1,105,818	-		SO1066	0.11	+0.2
1,105,910	+		SO1066	0.15	+1.6
1,105,917	+		SO1066	0.15	-2.1
1,105,943	+		SO1066	0.16	-0.9
1,105,959	-		SO1066	0.17	-0.7