Strain Fitness in Shewanella oneidensis MR-1 around SO1064

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
1,102,103	+		SO1061	0.88	+0.5
1,102,108	+		SO1061	0.89	-0.9
1,102,117	-		SO1061	0.89	+0.7
1,102,152	-				-0.4
1,102,497	-	def-2	SO1062	0.43	-1.3
1,102,505	-	def-2	SO1062	0.44	-2.5
1,102,580	+	def-2	SO1062	0.58	-0.1
1,102,887	+				-0.2
1,102,889	+	slyX	SO1063	0.11	+1.3
1,103,009	-	slyX	SO1063	0.67	-1.7
1,103,073	+				-1.3
1,103,085	+				-0.2
1,103,085	+				-2.7
1,103,190	+		SO1064	0.11	-1.4
1,103,199	-		SO1064	0.12	-0.6
1,103,263	-		SO1064	0.18	+0.5
1,103,411	+		SO1064	0.34	-1.3
1,103,433	-		SO1064	0.36	+0.9
1,103,435	+		SO1064	0.36	+0.6
1,103,437	+		SO1064	0.37	-2.8
1,103,443	-		SO1064	0.37	-0.1
1,103,443	-		SO1064	0.37	-0.2
1,103,499	+		SO1064	0.43	+0.3
1,103,529	+		SO1064	0.46	+1.2
1,103,529	+		SO1064	0.46	-0.9
1,103,549	-		SO1064	0.48	-0.2
1,103,627	+		SO1064	0.57	-0.1
1,103,627	+		SO1064	0.57	-0.3
1,103,650	-		SO1064	0.59	-2.8
1,103,662	+		SO1064	0.60	-0.6
1,103,709	+		SO1064	0.65	-3.8
1,103,748	-		SO1064	0.69	+0.4
1,103,818	+		SO1064	0.77	+0.2
1,103,818	+		SO1064	0.77	-0.5
1,103,818	+		SO1064	0.77	-1.8
1,103,818	+		SO1064	0.77	+0.4
1,103,826	-		SO1064	0.78	-0.1
1,103,868	+		SO1064	0.82	+0.2
1,103,884	+		SO1064	0.84	-2.6
1,103,884	+		SO1064	0.84	+0.2
1,103,884	+		SO1064	0.84	-0.0
1,103,884	+		SO1064	0.84	-2.2
1,103,884	+		SO1064	0.84	-0.5
1,103,884	+		SO1064	0.84	-2.6
1,103,884	+		SO1064	0.84	-3.2
1,103,884	+		SO1064	0.84	-0.2
1,103,884	+		SO1064	0.84	-0.0
1,103,892	-		SO1064	0.85	+0.5
1,103,892	-		SO1064	0.85	+0.2
1,103,892	-		SO1064	0.85	-0.5
1,103,892	-		SO1064	0.85	+0.3
1,103,892	-		SO1064	0.85	-1.0
1,103,892	-		SO1064	0.85	+0.3
1,103,902	-		SO1064	0.86	+1.1
1,103,931	-		SO1064	0.89	+1.9
1,103,977	+				+0.9
1,103,985	-				-2.0
1,104,111	+				+1.6
1,104,116	+				-0.9
1,104,124	-				-1.8
1,104,133	+				-1.2
1,104,134	+				-2.1
1,104,155	-				-0.9
1,104,239	-				-1.5
1,104,301	-	fkpA	SO1065	0.14	-1.4
1,104,311	+	fkpA	SO1065	0.15	-2.8
1,104,325	+	fkpA	SO1065	0.17	-0.7
1,104,328	-	fkpA	SO1065	0.18	-1.3
1,104,369	-	fkpA	SO1065	0.23	+0.2
1,104,378	+	fkpA	SO1065	0.24	+0.6
1,104,378	+	fkpA	SO1065	0.24	-0.9
1,104,379	+	fkpA	SO1065	0.24	+0.7
1,104,386	-	fkpA	SO1065	0.25	-2.3
1,104,386	-	fkpA	SO1065	0.25	+1.2
1,104,387	-	fkpA	SO1065	0.25	+0.3
1,104,522	+	fkpA	SO1065	0.43	-4.0
1,104,529	-	fkpA	SO1065	0.44	+0.2
1,104,596	+	fkpA	SO1065	0.53	-0.9
1,104,599	-	fkpA	SO1065	0.53	-2.5
1,104,650	+	fkpA	SO1065	0.60	-1.4
1,104,668	-	fkpA	SO1065	0.62	-2.0
1,104,730	+	fkpA	SO1065	0.70	-1.9
1,104,768	+	fkpA	SO1065	0.75	-2.7
1,104,776	-	fkpA	SO1065	0.76	-2.8
1,104,787	-	fkpA	SO1065	0.77	-2.6
1,104,821	-	fkpA	SO1065	0.82	-0.4
1,104,865	+	fkpA	SO1065	0.88	-2.2
1,104,870	+	fkpA	SO1065	0.88	-3.7
1,104,880	+	fkpA	SO1065	0.90	-0.6
1,104,888	-				-1.5
1,104,888	-				-3.0
1,104,945	-				-1.3
1,104,946	-				-0.1
1,104,964	-				-0.3
1,105,025	+				+0.2
1,105,035	-				-1.2