Strain Fitness in Shewanella oneidensis MR-1 around SO1056

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
1,093,948	+		SO1055	0.33	-2.2
1,093,948	+		SO1055	0.33	-0.2
1,093,948	+		SO1055	0.33	+1.4
1,094,107	+		SO1055	0.44	+1.5
1,094,107	+		SO1055	0.44	+0.5
1,094,107	+		SO1055	0.44	+1.1
1,094,181	+		SO1055	0.50	-0.1
1,094,181	+		SO1055	0.50	+0.5
1,094,235	+		SO1055	0.54	-0.9
1,094,248	+		SO1055	0.55	+0.0
1,094,256	-		SO1055	0.55	+0.3
1,094,275	+		SO1055	0.57	+2.0
1,094,342	-		SO1055	0.61	-0.4
1,094,411	+		SO1055	0.66	-0.9
1,094,411	+		SO1055	0.66	+0.4
1,094,419	-		SO1055	0.67	-1.0
1,094,457	+		SO1055	0.70	-1.0
1,094,499	+		SO1055	0.73	+2.8
1,094,537	-		SO1055	0.75	-0.6
1,094,543	+		SO1055	0.76	-0.0
1,094,622	+		SO1055	0.81	+1.4
1,094,622	+		SO1055	0.81	-1.8
1,094,622	+		SO1055	0.81	+0.2
1,094,627	+		SO1055	0.82	-1.3
1,094,630	-		SO1055	0.82	-3.3
1,094,737	-		SO1055	0.90	+1.0
1,094,737	-		SO1055	0.90	-0.8
1,094,764	+				-1.5
1,094,765	+				-1.8
1,094,765	+				-1.8
1,094,765	+				-0.7
1,094,765	+				+2.2
1,094,765	+				-1.1
1,094,765	+				+1.3
1,094,765	+				+1.2
1,094,765	+				+0.0
1,094,773	-				+0.6
1,094,773	-				+0.3
1,094,773	-				-1.8
1,094,773	-				+0.2
1,094,773	-				-1.3
1,094,775	+				+1.4
1,094,791	+				+0.1
1,094,849	-				+0.8
1,094,856	+				-1.3
1,094,864	-				-0.0
1,094,864	-				+1.3
1,094,935	+				+1.3
1,095,071	+				+0.2
1,095,375	-		SO1056	0.23	+0.8
1,095,612	+		SO1056	0.35	-0.3
1,095,739	-		SO1056	0.42	-2.9
1,095,760	+		SO1056	0.43	+0.7
1,095,822	-		SO1056	0.46	+1.1
1,095,911	+		SO1056	0.51	-0.9
1,095,918	-		SO1056	0.51	+0.6
1,095,959	+		SO1056	0.53	+1.3
1,095,988	+		SO1056	0.55	+1.0
1,096,007	-		SO1056	0.56	-0.2
1,096,102	+		SO1056	0.61	+1.5
1,096,142	+		SO1056	0.63	-3.4
1,096,150	-		SO1056	0.64	+0.8
1,096,150	-		SO1056	0.64	+0.5
1,096,219	-		SO1056	0.67	+1.4
1,096,223	+		SO1056	0.67	-1.2
1,096,223	+		SO1056	0.67	+0.2
1,096,231	-		SO1056	0.68	+0.1
1,096,231	-		SO1056	0.68	+0.9
1,096,231	-		SO1056	0.68	+0.9
1,096,266	+		SO1056	0.70	+0.6
1,096,268	+		SO1056	0.70	+1.0
1,096,268	+		SO1056	0.70	+0.1
1,096,268	+		SO1056	0.70	+0.6
1,096,268	+		SO1056	0.70	-2.0
1,096,268	+		SO1056	0.70	+0.6
1,096,268	+		SO1056	0.70	+0.4
1,096,276	-		SO1056	0.70	-0.1
1,096,276	-		SO1056	0.70	+0.6
1,096,365	-		SO1056	0.75	-0.3
1,096,554	+		SO1056	0.85	+0.7
1,096,671	+				-2.0
1,096,671	+				-2.8
1,096,671	+				-0.0
1,096,671	+				+0.5
1,096,671	+				+0.9
1,096,671	+				-0.6
1,096,673	+				+0.7
1,096,679	-				-0.4
1,096,679	-				+0.9
1,096,679	-				-1.7
1,096,679	-				+1.3
1,096,679	-				-1.2
1,096,679	-				+3.0
1,096,679	-				+2.0
1,096,679	-				+1.3
1,096,680	-				+0.9
1,096,681	-				-1.7
1,096,683	+				-0.0
1,096,690	+				+0.8
1,096,690	+				-2.0
1,096,691	+				-1.7
1,096,698	-				+0.5
1,096,699	-				-0.7
1,096,708	+				+0.3
1,096,709	+				+0.3
1,096,715	+				-0.7
1,096,729	-				-1.7
1,096,754	+				-1.9
1,096,770	+				+0.3
1,096,786	+				+1.3
1,096,789	-				+0.8
1,096,789	-				+0.6
1,096,791	-				-0.6
1,096,829	+				+0.6
1,096,847	-				+0.9
1,096,867	+				-1.5
1,096,867	+				-1.0
1,096,867	+				+1.4
1,096,867	+				+1.2
1,096,867	+				+0.4
1,096,873	+				+0.5
1,096,873	+				+1.1
1,096,873	+				+0.1
1,096,873	+				-1.0
1,096,881	-				-1.2
1,096,881	-				-2.2
1,096,881	-				+1.1
1,096,913	-				-0.9
1,096,915	+				-1.3
1,096,915	-				-2.0
1,096,923	-				-0.1
1,096,954	-				-0.7
1,096,998	+				-1.8
1,096,998	+				-1.1
1,097,011	+				-0.0
1,097,029	+				-2.2
1,097,029	+				+0.7
1,097,037	-				-1.9
1,097,091	+				-0.4
1,097,105	+				-0.6
1,097,118	-				-0.4
1,097,132	+				+1.3
1,097,132	+				-1.7
1,097,140	-				+0.5
1,097,182	-				-1.2
1,097,210	+				+0.6
1,097,250	+				-0.2
1,097,257	+				-0.0
1,097,257	+				+0.7
1,097,265	-				-0.9
1,097,311	-				-0.4
1,097,328	+				+0.4
1,097,365	+				-2.4
1,097,368	+				-0.3
1,097,409	+				+0.8
1,097,417	-				-1.7
1,097,431	+				-2.1
1,097,431	+				+0.9
1,097,431	+				+0.1
1,097,431	+				+0.6
1,097,487	+				+0.3
1,097,556	+				+0.6
1,097,564	-				-1.7
1,097,564	-				+0.6
1,097,580	+				-0.8
1,097,632	+		SO1059	0.11	-1.6
1,097,632	+		SO1059	0.11	-1.7
1,097,640	-		SO1059	0.12	-2.4
1,097,640	-		SO1059	0.12	+1.6
1,097,640	-		SO1059	0.12	+0.7
1,097,644	+		SO1059	0.12	-1.5
1,097,652	-		SO1059	0.12	-0.4
1,097,657	-		SO1059	0.12	+0.9
1,097,668	+		SO1059	0.13	-2.3
1,097,716	+		SO1059	0.15	+0.8
1,097,799	+		SO1059	0.18	-3.5
1,097,826	+		SO1059	0.19	-1.7