Strain Fitness in Shewanella oneidensis MR-1 around SO1053

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
1,090,305	+	pit	SO1052	0.44	+2.0
1,090,401	-	pit	SO1052	0.51	+1.9
1,090,597	+	pit	SO1052	0.64	+1.7
1,090,605	-	pit	SO1052	0.65	+1.5
1,090,612	+	pit	SO1052	0.65	-0.5
1,090,620	+	pit	SO1052	0.66	+1.7
1,090,620	+	pit	SO1052	0.66	+1.7
1,090,620	-	pit	SO1052	0.66	+1.9
1,090,628	-	pit	SO1052	0.66	+2.3
1,090,628	-	pit	SO1052	0.66	+1.4
1,090,709	+	pit	SO1052	0.72	+2.2
1,090,803	+	pit	SO1052	0.78	+2.5
1,090,811	-	pit	SO1052	0.79	+2.9
1,090,908	-	pit	SO1052	0.85	+0.9
1,091,009	+				+0.1
1,091,044	+				+2.4
1,091,062	+				+2.5
1,091,118	-				+2.5
1,091,121	+				-2.4
1,091,139	-				-1.5
1,091,193	-				+0.3
1,091,233	+				+0.3
1,091,239	-				-0.1
1,091,333	-				+0.2
1,091,473	-		SO1053	0.25	+0.9
1,091,569	-		SO1053	0.37	+0.5
1,091,603	+		SO1053	0.41	-0.3
1,091,611	-		SO1053	0.42	-0.4
1,091,736	-		SO1053	0.56	-1.0
1,091,783	+		SO1053	0.62	-2.8
1,091,783	+		SO1053	0.62	+0.9
1,091,783	+		SO1053	0.62	-0.7
1,091,823	-		SO1053	0.67	-0.2
1,091,872	-		SO1053	0.72	+0.4
1,092,198	-				+0.9
1,092,234	+		SO_1054	0.19	-0.7
1,092,300	-		SO_1054	0.42	-0.3
1,092,347	+		SO_1054	0.59	-0.7
1,092,347	-		SO_1054	0.59	-1.4
1,092,355	-		SO_1054	0.61	+0.8
1,092,385	+		SO_1054	0.72	+0.6
1,092,495	-				+0.2
1,092,588	+		SO1053.2	0.22	+0.6
1,092,588	-		SO1053.2	0.22	+0.4
1,092,606	-		SO1053.2	0.24	-2.0
1,092,606	-		SO1053.2	0.24	+3.0
1,092,656	+		SO1053.2	0.31	+0.6
1,092,656	+		SO1053.2	0.31	+0.8
1,092,711	-		SO1053.2	0.38	-1.3
1,092,711	-		SO1053.2	0.38	-0.7
1,092,885	+		SO1053.2	0.62	+0.9
1,092,899	-		SO1053.2	0.64	-0.1
1,092,923	+		SO1053.2	0.67	+1.2
1,092,924	+		SO1053.2	0.67	+0.3
1,092,931	-		SO1053.2	0.68	+1.1
1,092,944	+		SO1053.2	0.70	+0.2
1,092,989	-		SO1053.2	0.76	-0.9
1,093,063	+		SO1053.2	0.86	+0.2
1,093,086	+		SO1053.2	0.89	+1.0