Strain Fitness in Shewanella oneidensis MR-1 around SO1001

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
1,031,786	+		SO1000	0.42	-1.0
1,031,794	-		SO1000	0.42	+0.3
1,031,965	+		SO1000	0.53	+0.7
1,031,982	+		SO1000	0.54	-1.3
1,031,982	+		SO1000	0.54	-1.4
1,032,000	+		SO1000	0.55	-0.9
1,032,008	-		SO1000	0.56	+1.8
1,032,009	-		SO1000	0.56	-1.9
1,032,009	-		SO1000	0.56	-3.8
1,032,030	-		SO1000	0.57	+0.4
1,032,219	+		SO1000	0.69	+0.5
1,032,255	-		SO1000	0.71	+0.2
1,032,430	+		SO1000	0.82	+0.7
1,032,538	+		SO1000	0.89	-1.3
1,032,546	-		SO1000	0.90	+0.3
1,032,569	+				-1.0
1,032,591	-				-3.1
1,032,641	-				+0.2
1,032,723	+				+1.8
1,032,739	+				-0.8
1,032,830	+				+0.2
1,032,853	-	chaA	SO1001	0.10	+0.9
1,032,896	-	chaA	SO1001	0.14	-1.7
1,032,899	+	chaA	SO1001	0.14	+0.8
1,032,933	+	chaA	SO1001	0.17	+0.1
1,033,169	+	chaA	SO1001	0.39	+0.4
1,033,175	+	chaA	SO1001	0.40	-1.2
1,033,189	-	chaA	SO1001	0.41	-0.7
1,033,192	-	chaA	SO1001	0.41	+0.5
1,033,248	-	chaA	SO1001	0.46	+0.2
1,033,293	-	chaA	SO1001	0.50	+2.2
1,033,327	+	chaA	SO1001	0.53	+0.7
1,033,346	-	chaA	SO1001	0.55	+0.5
1,033,386	-	chaA	SO1001	0.59	-0.4
1,033,445	+	chaA	SO1001	0.64	+1.4
1,033,448	-	chaA	SO1001	0.64	+0.2
1,033,469	+	chaA	SO1001	0.66	+0.8
1,033,477	-	chaA	SO1001	0.67	+1.2
1,033,631	+	chaA	SO1001	0.81	+0.7
1,033,698	+	chaA	SO1001	0.87	+0.0
1,033,771	+				+1.7
1,033,789	-				+0.3
1,033,795	+				+0.6
1,034,031	+				+0.8
1,034,072	+				-3.7
1,034,072	+				+1.4
1,034,082	+				-0.1
1,034,183	+				-0.5
1,034,191	-				+0.0
1,034,232	-				-1.4
1,034,259	+				+0.3
1,034,321	-		SO1002	0.12	-0.8
1,034,328	+		SO1002	0.13	-0.8
1,034,336	-		SO1002	0.13	-1.4
1,034,336	-		SO1002	0.13	+0.1
1,034,369	-		SO1002	0.14	-0.1
1,034,472	-		SO1002	0.19	-2.3
1,034,472	-		SO1002	0.19	+0.4
1,034,573	+		SO1002	0.23	-0.5
1,034,638	+		SO1002	0.26	-1.9
1,034,638	+		SO1002	0.26	-0.0
1,034,638	+		SO1002	0.26	-2.0
1,034,638	+		SO1002	0.26	-2.1
1,034,638	+		SO1002	0.26	+1.6
1,034,650	+		SO1002	0.27	+0.8
1,034,695	+		SO1002	0.29	+1.0
1,034,787	-		SO1002	0.33	+0.4
1,034,789	+		SO1002	0.33	-0.7
1,034,789	+		SO1002	0.33	+2.5
1,034,789	+		SO1002	0.33	+0.4
1,034,789	+		SO1002	0.33	-0.2
1,034,797	-		SO1002	0.33	-2.3
1,034,797	-		SO1002	0.33	+0.2
1,034,797	-		SO1002	0.33	+0.7
1,034,797	-		SO1002	0.33	-0.8
1,034,804	+		SO1002	0.33	-0.6
1,034,825	-		SO1002	0.34	+0.9