Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt endA and SO0834 are separated by 138 nucleotides SO0834 and SO0835 are separated by 141 nucleotides SO0835 and SO0837 are separated by 363 nucleotides
SO0833: endA - endonuclease I (NCBI ptt file), at 851,317 to 852,093
endA
SO0834: SO0834 - sprT protein, putative (NCBI ptt file), at 852,232 to 852,852
SO0834
SO0835: SO0835 - conserved hypothetical protein (NCBI ptt file), at 852,994 to 854,151
SO0835
SO0837: SO0837 - beta-lactamase, putative (NCBI ptt file), at 854,515 to 855,312
SO0837
Position (kb) 852
853
854
855 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 852.046 kb on + strand at 852.063 kb on + strand at 852.072 kb on - strand at 852.220 kb on + strand at 852.228 kb on - strand at 852.230 kb on + strand at 852.249 kb on + strand at 852.286 kb on + strand at 852.294 kb on - strand, within SO0834 at 852.392 kb on + strand, within SO0834 at 852.401 kb on - strand, within SO0834 at 852.449 kb on + strand, within SO0834 at 852.538 kb on + strand, within SO0834 at 852.556 kb on - strand, within SO0834 at 852.556 kb on - strand, within SO0834 at 852.556 kb on - strand, within SO0834 at 852.660 kb on + strand, within SO0834 at 852.707 kb on - strand, within SO0834 at 852.798 kb on + strand at 853.001 kb on - strand at 853.001 kb on - strand at 853.040 kb on + strand at 853.070 kb on + strand at 853.085 kb on - strand at 853.092 kb on - strand at 853.104 kb on - strand at 853.150 kb on - strand, within SO0835 at 853.176 kb on - strand, within SO0835 at 853.181 kb on - strand, within SO0835 at 853.231 kb on - strand, within SO0835 at 853.254 kb on + strand, within SO0835 at 853.261 kb on - strand, within SO0835 at 853.337 kb on - strand, within SO0835 at 853.515 kb on + strand, within SO0835 at 853.528 kb on - strand, within SO0835 at 853.692 kb on + strand, within SO0835 at 853.840 kb on + strand, within SO0835 at 853.840 kb on + strand, within SO0835 at 853.848 kb on - strand, within SO0835 at 853.872 kb on - strand, within SO0835 at 853.924 kb on + strand, within SO0835 at 853.931 kb on - strand, within SO0835 at 853.931 kb on - strand, within SO0835 at 853.932 kb on - strand, within SO0835 at 853.932 kb on - strand, within SO0835 at 853.990 kb on + strand, within SO0835 at 854.075 kb on - strand at 854.085 kb on - strand at 854.091 kb on - strand at 854.133 kb on - strand at 854.133 kb on - strand at 854.203 kb on - strand at 854.215 kb on + strand at 854.215 kb on + strand at 854.215 kb on + strand at 854.215 kb on + strand at 854.215 kb on + strand at 854.215 kb on + strand at 854.222 kb on - strand at 854.223 kb on - strand at 854.223 kb on - strand at 854.259 kb on + strand at 854.259 kb on + strand at 854.267 kb on - strand at 854.267 kb on - strand at 854.267 kb on - strand at 854.267 kb on - strand at 854.271 kb on + strand at 854.271 kb on + strand at 854.279 kb on - strand at 854.279 kb on - strand at 854.431 kb on + strand at 854.448 kb on + strand at 854.521 kb on + strand at 854.529 kb on - strand at 854.529 kb on - strand at 854.529 kb on - strand at 854.529 kb on - strand at 854.529 kb on - strand at 854.529 kb on - strand at 854.637 kb on + strand, within SO0837 at 854.639 kb on + strand, within SO0837 at 854.639 kb on + strand, within SO0837 at 854.645 kb on - strand, within SO0837 at 854.645 kb on - strand, within SO0837 at 855.108 kb on + strand, within SO0837 at 855.116 kb on - strand, within SO0837
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 852,046 + -1.2 852,063 + -1.0 852,072 - -0.5 852,220 + +1.3 852,228 - -1.7 852,230 + +1.9 852,249 + +0.4 852,286 + +0.7 852,294 - SO0834 0.10 -0.4 852,392 + SO0834 0.26 -2.7 852,401 - SO0834 0.27 -1.4 852,449 + SO0834 0.35 -1.8 852,538 + SO0834 0.49 -1.9 852,556 - SO0834 0.52 +1.3 852,556 - SO0834 0.52 -0.5 852,556 - SO0834 0.52 +0.3 852,660 + SO0834 0.69 -1.8 852,707 - SO0834 0.76 +0.3 852,798 + +0.7 853,001 - +0.2 853,001 - -0.2 853,040 + +1.6 853,070 + +0.1 853,085 - +1.3 853,092 - +1.6 853,104 - -0.2 853,150 - SO0835 0.13 -1.0 853,176 - SO0835 0.16 +0.8 853,181 - SO0835 0.16 -1.5 853,231 - SO0835 0.20 -1.1 853,254 + SO0835 0.22 +1.4 853,261 - SO0835 0.23 -0.1 853,337 - SO0835 0.30 -1.9 853,515 + SO0835 0.45 +1.7 853,528 - SO0835 0.46 +0.4 853,692 + SO0835 0.60 +0.5 853,840 + SO0835 0.73 +2.7 853,840 + SO0835 0.73 -1.4 853,848 - SO0835 0.74 +1.4 853,872 - SO0835 0.76 +0.1 853,924 + SO0835 0.80 +1.8 853,931 - SO0835 0.81 -1.0 853,931 - SO0835 0.81 -0.7 853,932 - SO0835 0.81 +0.4 853,932 - SO0835 0.81 +1.3 853,990 + SO0835 0.86 +2.7 854,075 - +0.6 854,085 - -0.0 854,091 - +1.1 854,133 - -2.1 854,133 - -1.2 854,203 - +2.9 854,215 + +6.2 854,215 + +5.8 854,215 + +6.4 854,215 + +6.2 854,215 + +6.4 854,215 + +6.2 854,222 - +1.4 854,223 - -1.6 854,223 - -2.9 854,259 + +4.4 854,259 + +6.7 854,267 - +1.0 854,267 - -1.0 854,267 - -0.7 854,267 - +0.8 854,271 + +5.5 854,271 + +6.4 854,279 - +2.8 854,279 - +2.9 854,431 + +8.0 854,448 + +7.7 854,521 + -2.6 854,529 - -0.6 854,529 - -1.6 854,529 - -2.7 854,529 - -2.8 854,529 - -2.8 854,529 - -5.1 854,637 + SO0837 0.15 -3.0 854,639 + SO0837 0.16 -3.9 854,639 + SO0837 0.16 +0.2 854,645 - SO0837 0.16 -4.4 854,645 - SO0837 0.16 -1.0 855,108 + SO0837 0.74 -3.2 855,116 - SO0837 0.75 -0.9
Or see this region's nucleotide sequence