Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0832 and endA are separated by 8 nucleotides endA and SO0834 are separated by 138 nucleotides SO0834 and SO0835 are separated by 141 nucleotides
SO0832: SO0832 - conserved hypothetical protein TIGR00046 (NCBI ptt file), at 850,577 to 851,308
SO0832
SO0833: endA - endonuclease I (NCBI ptt file), at 851,317 to 852,093
endA
SO0834: SO0834 - sprT protein, putative (NCBI ptt file), at 852,232 to 852,852
SO0834
SO0835: SO0835 - conserved hypothetical protein (NCBI ptt file), at 852,994 to 854,151
SO0835
Position (kb) 852
853 Strain fitness (log2 ratio) -2
-1
0
1
2 at 851.441 kb on + strand, within endA at 851.443 kb on - strand, within endA at 851.651 kb on + strand, within endA at 851.651 kb on + strand, within endA at 851.681 kb on - strand, within endA at 851.763 kb on - strand, within endA at 851.796 kb on - strand, within endA at 851.796 kb on - strand, within endA at 851.937 kb on - strand, within endA at 851.937 kb on - strand, within endA at 851.946 kb on + strand, within endA at 851.973 kb on - strand, within endA at 851.974 kb on - strand, within endA at 851.984 kb on - strand, within endA at 852.046 kb on + strand at 852.063 kb on + strand at 852.072 kb on - strand at 852.220 kb on + strand at 852.228 kb on - strand at 852.230 kb on + strand at 852.249 kb on + strand at 852.286 kb on + strand at 852.294 kb on - strand, within SO0834 at 852.392 kb on + strand, within SO0834 at 852.401 kb on - strand, within SO0834 at 852.449 kb on + strand, within SO0834 at 852.538 kb on + strand, within SO0834 at 852.556 kb on - strand, within SO0834 at 852.556 kb on - strand, within SO0834 at 852.556 kb on - strand, within SO0834 at 852.660 kb on + strand, within SO0834 at 852.707 kb on - strand, within SO0834 at 852.798 kb on + strand at 853.001 kb on - strand at 853.001 kb on - strand at 853.040 kb on + strand at 853.070 kb on + strand at 853.085 kb on - strand at 853.092 kb on - strand at 853.104 kb on - strand at 853.150 kb on - strand, within SO0835 at 853.176 kb on - strand, within SO0835 at 853.181 kb on - strand, within SO0835 at 853.231 kb on - strand, within SO0835 at 853.254 kb on + strand, within SO0835 at 853.261 kb on - strand, within SO0835 at 853.337 kb on - strand, within SO0835 at 853.515 kb on + strand, within SO0835 at 853.528 kb on - strand, within SO0835 at 853.692 kb on + strand, within SO0835 at 853.840 kb on + strand, within SO0835 at 853.840 kb on + strand, within SO0835 at 853.848 kb on - strand, within SO0835
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 851,441 + endA SO0833 0.16 -1.0 851,443 - endA SO0833 0.16 -0.2 851,651 + endA SO0833 0.43 +0.2 851,651 + endA SO0833 0.43 +1.1 851,681 - endA SO0833 0.47 +0.3 851,763 - endA SO0833 0.57 +0.6 851,796 - endA SO0833 0.62 -1.0 851,796 - endA SO0833 0.62 +1.4 851,937 - endA SO0833 0.80 +0.5 851,937 - endA SO0833 0.80 -0.5 851,946 + endA SO0833 0.81 -0.2 851,973 - endA SO0833 0.84 +0.0 851,974 - endA SO0833 0.85 -0.9 851,984 - endA SO0833 0.86 -0.1 852,046 + -1.2 852,063 + -1.0 852,072 - -0.5 852,220 + +1.3 852,228 - -1.7 852,230 + +1.9 852,249 + +0.4 852,286 + +0.7 852,294 - SO0834 0.10 -0.4 852,392 + SO0834 0.26 -2.7 852,401 - SO0834 0.27 -1.4 852,449 + SO0834 0.35 -1.8 852,538 + SO0834 0.49 -1.9 852,556 - SO0834 0.52 +1.3 852,556 - SO0834 0.52 -0.5 852,556 - SO0834 0.52 +0.3 852,660 + SO0834 0.69 -1.8 852,707 - SO0834 0.76 +0.3 852,798 + +0.7 853,001 - +0.2 853,001 - -0.2 853,040 + +1.6 853,070 + +0.1 853,085 - +1.3 853,092 - +1.6 853,104 - -0.2 853,150 - SO0835 0.13 -1.0 853,176 - SO0835 0.16 +0.8 853,181 - SO0835 0.16 -1.5 853,231 - SO0835 0.20 -1.1 853,254 + SO0835 0.22 +1.4 853,261 - SO0835 0.23 -0.1 853,337 - SO0835 0.30 -1.9 853,515 + SO0835 0.45 +1.7 853,528 - SO0835 0.46 +0.4 853,692 + SO0835 0.60 +0.5 853,840 + SO0835 0.73 +2.7 853,840 + SO0835 0.73 -1.4 853,848 - SO0835 0.74 +1.4
Or see this region's nucleotide sequence