Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt amt and glnB-1 are separated by 34 nucleotides glnB-1 and SO0762 are separated by 308 nucleotides
SO0760: amt - ammonium transporter (NCBI ptt file), at 775,008 to 776,234
amt
SO0761: glnB-1 - nitrogen regulatory protein P-II 1 (NCBI ptt file), at 776,269 to 776,607
glnB-1
SO0762: SO0762 - isochorismatase family protein (NCBI ptt file), at 776,916 to 777,458
SO0762
Position (kb) 776
777 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 775.310 kb on + strand, within amt at 775.322 kb on + strand, within amt at 775.330 kb on - strand, within amt at 775.501 kb on + strand, within amt at 775.512 kb on + strand, within amt at 775.659 kb on + strand, within amt at 775.671 kb on + strand, within amt at 775.744 kb on - strand, within amt at 775.794 kb on - strand, within amt at 775.807 kb on + strand, within amt at 775.875 kb on + strand, within amt at 776.019 kb on - strand, within amt at 776.124 kb on + strand at 776.124 kb on + strand at 776.124 kb on + strand at 776.158 kb on + strand at 776.214 kb on + strand at 776.275 kb on - strand at 776.282 kb on + strand at 776.290 kb on - strand at 776.316 kb on + strand, within glnB-1 at 776.380 kb on - strand, within glnB-1 at 776.462 kb on + strand, within glnB-1 at 776.483 kb on - strand, within glnB-1 at 776.504 kb on + strand, within glnB-1 at 776.527 kb on + strand, within glnB-1 at 776.599 kb on - strand at 776.614 kb on - strand at 776.788 kb on - strand at 776.915 kb on - strand at 776.940 kb on - strand at 776.984 kb on - strand, within SO0762 at 777.028 kb on - strand, within SO0762 at 777.030 kb on + strand, within SO0762 at 777.053 kb on + strand, within SO0762 at 777.063 kb on + strand, within SO0762 at 777.156 kb on + strand, within SO0762 at 777.174 kb on - strand, within SO0762 at 777.319 kb on + strand, within SO0762 at 777.369 kb on + strand, within SO0762 at 777.384 kb on - strand, within SO0762 at 777.408 kb on + strand at 777.468 kb on + strand at 777.497 kb on + strand at 777.497 kb on + strand at 777.497 kb on + strand at 777.497 kb on + strand at 777.505 kb on - strand at 777.505 kb on - strand at 777.505 kb on - strand at 777.505 kb on - strand at 777.517 kb on - strand at 777.533 kb on - strand at 777.540 kb on + strand at 777.556 kb on + strand at 777.556 kb on + strand at 777.556 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 775,310 + amt SO0760 0.25 +2.6 775,322 + amt SO0760 0.26 +0.1 775,330 - amt SO0760 0.26 +0.9 775,501 + amt SO0760 0.40 +0.1 775,512 + amt SO0760 0.41 -0.1 775,659 + amt SO0760 0.53 -1.5 775,671 + amt SO0760 0.54 +2.1 775,744 - amt SO0760 0.60 +0.3 775,794 - amt SO0760 0.64 -4.5 775,807 + amt SO0760 0.65 +2.7 775,875 + amt SO0760 0.71 -0.8 776,019 - amt SO0760 0.82 +0.6 776,124 + -1.4 776,124 + +0.0 776,124 + -2.7 776,158 + -2.5 776,214 + -1.1 776,275 - +0.9 776,282 + -0.3 776,290 - -0.9 776,316 + glnB-1 SO0761 0.14 -2.1 776,380 - glnB-1 SO0761 0.33 -2.6 776,462 + glnB-1 SO0761 0.57 +0.6 776,483 - glnB-1 SO0761 0.63 -0.4 776,504 + glnB-1 SO0761 0.69 -1.9 776,527 + glnB-1 SO0761 0.76 +0.0 776,599 - -2.8 776,614 - +2.4 776,788 - -1.5 776,915 - -0.3 776,940 - +0.2 776,984 - SO0762 0.13 +1.2 777,028 - SO0762 0.21 -0.4 777,030 + SO0762 0.21 -0.4 777,053 + SO0762 0.25 +0.7 777,063 + SO0762 0.27 +1.9 777,156 + SO0762 0.44 +0.3 777,174 - SO0762 0.48 -0.2 777,319 + SO0762 0.74 +0.9 777,369 + SO0762 0.83 +1.2 777,384 - SO0762 0.86 +1.0 777,408 + -0.9 777,468 + +1.8 777,497 + -1.9 777,497 + +0.6 777,497 + -0.9 777,497 + +1.3 777,505 - +0.2 777,505 - -0.1 777,505 - +0.2 777,505 - +2.3 777,517 - -3.1 777,533 - +2.2 777,540 + +1.9 777,556 + -0.6 777,556 + -3.2 777,556 + -0.6
Or see this region's nucleotide sequence