Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0750 and SO0752 are separated by 415 nucleotides SO0752 and SO0753 are separated by 56 nucleotides SO0753 and SO0754 are separated by 110 nucleotides
SO0750: SO0750 - glutamate synthase, putative (NCBI ptt file), at 766,859 to 768,349
SO0750
SO0752: SO0752 - hypothetical protein (NCBI ptt file), at 768,765 to 768,971
SO0752
SO0753: SO0753 - hypothetical protein (NCBI ptt file), at 769,028 to 769,285
SO0753
SO0754: SO0754 - ABC transporter, ATP-binding protein (NCBI ptt file), at 769,396 to 771,186
SO0754
Position (kb) 769
770 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 768.028 kb on + strand, within SO0750 at 768.036 kb on - strand, within SO0750 at 768.085 kb on + strand, within SO0750 at 768.087 kb on + strand, within SO0750 at 768.159 kb on + strand, within SO0750 at 768.167 kb on - strand, within SO0750 at 768.167 kb on - strand, within SO0750 at 768.212 kb on + strand at 768.219 kb on + strand at 768.219 kb on + strand at 768.227 kb on - strand at 768.246 kb on - strand at 768.246 kb on - strand at 768.270 kb on + strand at 768.325 kb on + strand at 768.690 kb on - strand at 768.797 kb on + strand, within SO0752 at 768.876 kb on + strand, within SO0752 at 769.088 kb on + strand, within SO0753 at 769.135 kb on + strand, within SO0753 at 769.143 kb on - strand, within SO0753 at 769.146 kb on + strand, within SO0753 at 769.146 kb on + strand, within SO0753 at 769.148 kb on + strand, within SO0753 at 769.154 kb on - strand, within SO0753 at 769.216 kb on + strand, within SO0753 at 769.230 kb on + strand, within SO0753 at 769.258 kb on - strand, within SO0753 at 769.373 kb on - strand at 769.373 kb on - strand at 769.373 kb on - strand at 769.373 kb on - strand at 769.373 kb on - strand at 769.453 kb on + strand at 769.512 kb on - strand at 769.560 kb on - strand at 769.574 kb on + strand at 769.611 kb on + strand, within SO0754 at 769.624 kb on + strand, within SO0754 at 769.632 kb on - strand, within SO0754 at 769.645 kb on + strand, within SO0754 at 769.659 kb on - strand, within SO0754 at 769.727 kb on - strand, within SO0754 at 769.747 kb on + strand, within SO0754 at 769.747 kb on + strand, within SO0754 at 769.857 kb on - strand, within SO0754 at 769.904 kb on + strand, within SO0754 at 769.904 kb on + strand, within SO0754 at 769.904 kb on + strand, within SO0754 at 769.904 kb on + strand, within SO0754 at 769.912 kb on - strand, within SO0754 at 769.912 kb on - strand, within SO0754 at 769.912 kb on - strand, within SO0754 at 769.971 kb on - strand, within SO0754 at 770.069 kb on - strand, within SO0754 at 770.174 kb on + strand, within SO0754 at 770.182 kb on - strand, within SO0754 at 770.275 kb on - strand, within SO0754 at 770.275 kb on - strand, within SO0754 at 770.276 kb on - strand, within SO0754
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 768,028 + SO0750 0.78 +0.6 768,036 - SO0750 0.79 -1.3 768,085 + SO0750 0.82 +0.1 768,087 + SO0750 0.82 -2.8 768,159 + SO0750 0.87 +2.9 768,167 - SO0750 0.88 -0.6 768,167 - SO0750 0.88 +0.6 768,212 + +0.8 768,219 + +1.0 768,219 + +0.9 768,227 - -3.9 768,246 - +0.3 768,246 - -1.9 768,270 + +0.2 768,325 + +1.2 768,690 - +0.4 768,797 + SO0752 0.15 +0.6 768,876 + SO0752 0.54 -1.8 769,088 + SO0753 0.23 +3.6 769,135 + SO0753 0.41 +3.3 769,143 - SO0753 0.45 +3.7 769,146 + SO0753 0.46 +3.2 769,146 + SO0753 0.46 +4.6 769,148 + SO0753 0.47 +3.8 769,154 - SO0753 0.49 +2.9 769,216 + SO0753 0.73 +3.4 769,230 + SO0753 0.78 +3.6 769,258 - SO0753 0.89 +3.9 769,373 - +0.5 769,373 - +0.6 769,373 - +1.4 769,373 - -0.6 769,373 - -0.4 769,453 + -2.4 769,512 - +0.3 769,560 - +1.2 769,574 + +0.5 769,611 + SO0754 0.12 +0.9 769,624 + SO0754 0.13 -0.7 769,632 - SO0754 0.13 -0.9 769,645 + SO0754 0.14 -0.1 769,659 - SO0754 0.15 +1.9 769,727 - SO0754 0.18 -1.8 769,747 + SO0754 0.20 -2.8 769,747 + SO0754 0.20 +0.4 769,857 - SO0754 0.26 +1.2 769,904 + SO0754 0.28 -1.0 769,904 + SO0754 0.28 -1.1 769,904 + SO0754 0.28 -2.0 769,904 + SO0754 0.28 +1.1 769,912 - SO0754 0.29 +0.7 769,912 - SO0754 0.29 -0.2 769,912 - SO0754 0.29 +1.9 769,971 - SO0754 0.32 +0.0 770,069 - SO0754 0.38 -0.4 770,174 + SO0754 0.43 -0.8 770,182 - SO0754 0.44 +1.4 770,275 - SO0754 0.49 -2.5 770,275 - SO0754 0.49 -1.1 770,276 - SO0754 0.49 +1.6
Or see this region's nucleotide sequence