Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0715 and SO0716 overlap by 1 nucleotides SO0716 and SO0717 overlap by 4 nucleotides SO0717 and SO0718 are separated by 94 nucleotides SO0718 and SO0719 are separated by 140 nucleotides
SO0715: SO0715 - oxidoreductase, molybdopterin-binding (NCBI ptt file), at 731,746 to 732,972
SO0715
SO0716: SO0716 - monoheme cytochrome c, putative (NCBI ptt file), at 732,972 to 733,355
SO0716
SO0717: SO0717 - monoheme cytochrome c (NCBI ptt file), at 733,352 to 733,687
SO0717
SO0718: SO0718 - conserved hypothetical protein (NCBI ptt file), at 733,782 to 734,261
SO0718
SO0719: SO0719 - TonB-dependent receptor, putative (NCBI ptt file), at 734,402 to 736,645
SO0719
Position (kb) 733
734 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 732.353 kb on + strand, within SO0715 at 732.363 kb on - strand, within SO0715 at 732.419 kb on + strand, within SO0715 at 732.419 kb on + strand, within SO0715 at 732.434 kb on + strand, within SO0715 at 732.442 kb on - strand, within SO0715 at 732.517 kb on + strand, within SO0715 at 732.525 kb on - strand, within SO0715 at 732.664 kb on + strand, within SO0715 at 732.685 kb on - strand, within SO0715 at 732.691 kb on - strand, within SO0715 at 732.705 kb on - strand, within SO0715 at 732.839 kb on + strand, within SO0715 at 732.883 kb on + strand at 732.891 kb on - strand at 732.933 kb on + strand at 732.933 kb on + strand at 732.941 kb on - strand at 732.958 kb on - strand at 732.964 kb on - strand at 733.010 kb on + strand at 733.170 kb on + strand, within SO0716 at 733.219 kb on + strand, within SO0716 at 733.227 kb on - strand, within SO0716 at 733.241 kb on + strand, within SO0716 at 733.271 kb on + strand, within SO0716 at 733.271 kb on + strand, within SO0716 at 733.283 kb on + strand, within SO0716 at 733.450 kb on + strand, within SO0717 at 733.457 kb on + strand, within SO0717 at 733.468 kb on - strand, within SO0717 at 733.571 kb on + strand, within SO0717 at 733.603 kb on + strand, within SO0717 at 733.645 kb on + strand, within SO0717 at 733.645 kb on + strand, within SO0717 at 733.645 kb on + strand, within SO0717 at 733.653 kb on - strand, within SO0717 at 733.655 kb on + strand at 733.655 kb on + strand at 733.677 kb on + strand at 733.750 kb on - strand at 733.855 kb on + strand, within SO0718 at 733.900 kb on - strand, within SO0718 at 733.909 kb on + strand, within SO0718 at 733.919 kb on + strand, within SO0718 at 733.919 kb on + strand, within SO0718 at 733.927 kb on - strand, within SO0718 at 733.927 kb on - strand, within SO0718 at 733.927 kb on - strand, within SO0718 at 733.975 kb on + strand, within SO0718 at 733.975 kb on + strand, within SO0718 at 733.977 kb on + strand, within SO0718 at 733.985 kb on - strand, within SO0718 at 733.994 kb on + strand, within SO0718 at 734.081 kb on + strand, within SO0718 at 734.089 kb on - strand, within SO0718 at 734.106 kb on - strand, within SO0718 at 734.106 kb on - strand, within SO0718 at 734.137 kb on + strand, within SO0718 at 734.189 kb on + strand, within SO0718 at 734.191 kb on + strand, within SO0718 at 734.201 kb on + strand, within SO0718 at 734.234 kb on + strand at 734.234 kb on + strand at 734.234 kb on + strand at 734.234 kb on + strand at 734.236 kb on + strand at 734.271 kb on - strand at 734.290 kb on - strand at 734.323 kb on + strand at 734.323 kb on + strand at 734.331 kb on - strand at 734.331 kb on - strand at 734.331 kb on - strand at 734.433 kb on - strand at 734.450 kb on - strand at 734.475 kb on + strand at 734.595 kb on - strand at 734.608 kb on - strand at 734.624 kb on + strand at 734.624 kb on + strand at 734.632 kb on - strand, within SO0719 at 734.632 kb on - strand, within SO0719
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 732,353 + SO0715 0.49 -2.5 732,363 - SO0715 0.50 +0.2 732,419 + SO0715 0.55 -0.7 732,419 + SO0715 0.55 +0.5 732,434 + SO0715 0.56 -0.4 732,442 - SO0715 0.57 -0.6 732,517 + SO0715 0.63 +1.3 732,525 - SO0715 0.63 -0.5 732,664 + SO0715 0.75 -0.1 732,685 - SO0715 0.77 +0.7 732,691 - SO0715 0.77 -3.1 732,705 - SO0715 0.78 +1.8 732,839 + SO0715 0.89 +0.8 732,883 + +0.4 732,891 - -0.5 732,933 + +1.3 732,933 + -1.1 732,941 - -0.3 732,958 - +0.2 732,964 - +2.0 733,010 + -0.2 733,170 + SO0716 0.52 -1.2 733,219 + SO0716 0.64 +1.0 733,227 - SO0716 0.66 -0.3 733,241 + SO0716 0.70 +0.2 733,271 + SO0716 0.78 -0.8 733,271 + SO0716 0.78 +0.1 733,283 + SO0716 0.81 -2.2 733,450 + SO0717 0.29 -0.4 733,457 + SO0717 0.31 -3.3 733,468 - SO0717 0.35 -0.7 733,571 + SO0717 0.65 +0.4 733,603 + SO0717 0.75 +0.5 733,645 + SO0717 0.87 +0.2 733,645 + SO0717 0.87 +1.4 733,645 + SO0717 0.87 +1.3 733,653 - SO0717 0.90 +1.6 733,655 + +1.5 733,655 + +0.9 733,677 + +0.0 733,750 - -2.0 733,855 + SO0718 0.15 -0.5 733,900 - SO0718 0.25 +1.1 733,909 + SO0718 0.26 +0.1 733,919 + SO0718 0.29 +0.9 733,919 + SO0718 0.29 -0.1 733,927 - SO0718 0.30 +1.0 733,927 - SO0718 0.30 +1.3 733,927 - SO0718 0.30 -1.5 733,975 + SO0718 0.40 +0.6 733,975 + SO0718 0.40 -1.6 733,977 + SO0718 0.41 -2.2 733,985 - SO0718 0.42 -3.7 733,994 + SO0718 0.44 -2.0 734,081 + SO0718 0.62 +2.5 734,089 - SO0718 0.64 +0.1 734,106 - SO0718 0.68 -2.1 734,106 - SO0718 0.68 -3.8 734,137 + SO0718 0.74 +0.3 734,189 + SO0718 0.85 +1.5 734,191 + SO0718 0.85 -1.1 734,201 + SO0718 0.87 +0.2 734,234 + -0.3 734,234 + -2.7 734,234 + -3.0 734,234 + -0.5 734,236 + -0.1 734,271 - -1.9 734,290 - -0.2 734,323 + -0.1 734,323 + -1.1 734,331 - -0.4 734,331 - +2.3 734,331 - -0.1 734,433 - -0.2 734,450 - -0.1 734,475 + +1.9 734,595 - -1.1 734,608 - -1.7 734,624 + +0.4 734,624 + -1.1 734,632 - SO0719 0.10 +0.0 734,632 - SO0719 0.10 -1.6
Or see this region's nucleotide sequence