Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0566 and plsC are separated by 182 nucleotides plsC and SO0568 are separated by 43 nucleotides SO0568 and SO0569 are separated by 56 nucleotides
SO0566: SO0566 - ABC 3 transport family protein (NCBI ptt file), at 587,408 to 588,187
SO0566
SO0567: plsC - 1-acyl-sn-glycerol-3-phosphate acyltransferase (NCBI ptt file), at 588,370 to 589,113
plsC
SO0568: SO0568 - conserved hypothetical protein (NCBI ptt file), at 589,157 to 589,561
SO0568
SO0569: SO0569 - sensory box/GGDEF family protein (NCBI ptt file), at 589,618 to 590,592
SO0569
Position (kb) 589
590 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 588.165 kb on + strand at 588.165 kb on + strand at 588.173 kb on - strand at 588.176 kb on + strand at 588.394 kb on - strand at 588.394 kb on - strand at 588.472 kb on + strand, within plsC at 588.540 kb on + strand, within plsC at 588.612 kb on + strand, within plsC at 588.620 kb on - strand, within plsC at 588.620 kb on - strand, within plsC at 588.625 kb on + strand, within plsC at 588.679 kb on + strand, within plsC at 588.976 kb on - strand, within plsC at 589.203 kb on + strand, within SO0568 at 589.208 kb on + strand, within SO0568 at 589.208 kb on + strand, within SO0568 at 589.208 kb on + strand, within SO0568 at 589.252 kb on - strand, within SO0568 at 589.254 kb on + strand, within SO0568 at 589.254 kb on + strand, within SO0568 at 589.255 kb on - strand, within SO0568 at 589.383 kb on + strand, within SO0568 at 589.541 kb on + strand at 589.556 kb on + strand at 589.620 kb on + strand at 589.642 kb on + strand at 589.650 kb on - strand at 589.650 kb on - strand at 589.650 kb on - strand at 589.681 kb on + strand at 589.749 kb on + strand, within SO0569 at 589.749 kb on + strand, within SO0569 at 589.749 kb on + strand, within SO0569 at 589.749 kb on + strand, within SO0569 at 589.757 kb on - strand, within SO0569 at 589.757 kb on - strand, within SO0569 at 589.757 kb on - strand, within SO0569 at 589.782 kb on - strand, within SO0569 at 589.782 kb on - strand, within SO0569 at 589.834 kb on + strand, within SO0569 at 589.861 kb on + strand, within SO0569 at 589.869 kb on - strand, within SO0569 at 589.870 kb on - strand, within SO0569 at 589.879 kb on + strand, within SO0569 at 589.896 kb on + strand, within SO0569 at 589.933 kb on + strand, within SO0569 at 589.965 kb on - strand, within SO0569 at 590.161 kb on - strand, within SO0569 at 590.293 kb on - strand, within SO0569 at 590.403 kb on + strand, within SO0569 at 590.416 kb on + strand, within SO0569 at 590.424 kb on - strand, within SO0569 at 590.477 kb on - strand, within SO0569 at 590.514 kb on - strand at 590.526 kb on + strand at 590.534 kb on - strand at 590.534 kb on - strand at 590.534 kb on - strand at 590.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 588,165 + +1.4 588,165 + -0.6 588,173 - +0.2 588,176 + -0.9 588,394 - -1.1 588,394 - -2.7 588,472 + plsC SO0567 0.14 -4.0 588,540 + plsC SO0567 0.23 -1.5 588,612 + plsC SO0567 0.33 -2.1 588,620 - plsC SO0567 0.34 -1.8 588,620 - plsC SO0567 0.34 +0.2 588,625 + plsC SO0567 0.34 -1.6 588,679 + plsC SO0567 0.42 +1.4 588,976 - plsC SO0567 0.81 +0.8 589,203 + SO0568 0.11 +1.7 589,208 + SO0568 0.13 -0.5 589,208 + SO0568 0.13 +2.5 589,208 + SO0568 0.13 +1.0 589,252 - SO0568 0.23 +1.1 589,254 + SO0568 0.24 +1.5 589,254 + SO0568 0.24 +3.2 589,255 - SO0568 0.24 -1.1 589,383 + SO0568 0.56 -1.2 589,541 + -1.0 589,556 + -2.7 589,620 + -0.5 589,642 + +0.2 589,650 - +0.3 589,650 - +1.5 589,650 - +2.5 589,681 + +0.1 589,749 + SO0569 0.13 -0.9 589,749 + SO0569 0.13 +0.9 589,749 + SO0569 0.13 -0.7 589,749 + SO0569 0.13 -1.4 589,757 - SO0569 0.14 -0.3 589,757 - SO0569 0.14 +1.2 589,757 - SO0569 0.14 +0.4 589,782 - SO0569 0.17 +0.2 589,782 - SO0569 0.17 -1.3 589,834 + SO0569 0.22 -2.2 589,861 + SO0569 0.25 -0.2 589,869 - SO0569 0.26 +1.4 589,870 - SO0569 0.26 -1.0 589,879 + SO0569 0.27 +0.0 589,896 + SO0569 0.29 +1.3 589,933 + SO0569 0.32 -0.7 589,965 - SO0569 0.36 +0.6 590,161 - SO0569 0.56 -0.7 590,293 - SO0569 0.69 -0.8 590,403 + SO0569 0.81 +0.2 590,416 + SO0569 0.82 +1.0 590,424 - SO0569 0.83 +0.3 590,477 - SO0569 0.88 -0.8 590,514 - +0.3 590,526 + +1.1 590,534 - +0.4 590,534 - -0.2 590,534 - -0.5 590,542 - +0.9
Or see this region's nucleotide sequence